RNA id: XM_021597181.2


Basic Information

Item Value
RNA id XM_021597181.2
length 1966
RNA type mRNA
GC content 0.50
exon number 10
gene id cdca7a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49731876 ~ 49735462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCTATCTGCAAGTCTGGAGGTGTTTCTCTGCATTCATTAAAGGACTGAACAAGCGTGAACACGAGTTTAGATTGACTTTCTTTGCAGGAAACTTTAAAGAAAACCAAATGAGTCCATCTCGCTCTAGGGCCCCCCAGCCTCCTTCCACCAGGATGAGTTTGCGGAGCTTCCGTAACGTGCCCATGGagacatcctcttcctcctcagatgACAGCTGTGATAGTTTTGGCTCGGACGGTGGCTTTGCCAACACGAAAAGTAGCTTCAGAGAAGCTAAGAAGGTGGCGGAGAGAGCCAAGGTGTTTGAGGCTAGCTCGGAGGAAGAGTCTCTCACTGGGTTCGAGAATGCTTTCAGCAGTAAAATGAGTGCCATGACAGTGGACTCTGACTCGGAGGAGTCGGTGGGGCCTCGGCGGAAGGGCCGTCGGTCCCAGACCCTGAAGGTGGCCTTGAAGTTCCCCACCAGGAGGGCCACCCAGAAGACTACTGCAGCAGAGCCCTCTAAACAGCCCAAAAAAGAGTCTGACTCCAAGGAGGGAGGCAACTTCATGGACAAGAGAGCGCTTAACATTAAGGAGAACAAAGCAATGCTTGCAAAGCTGATGGCAGAACTCAACAAAATACCTGGCTTCCCCAGAAGATCATCCCTGCCTATGATGAATACGCCTCGTCGTGCCCCCCGCCAGTCTCTGGGAGCCTCAGGACCCCGTAGGAGGAACCCTGAACGCACCTCTCGGCCCCACACTCGCTCCCGCACCCTGGTGGACGGCCCCCCCAGCCCTCctccagaggaagaggaggacaagtTCAACCTGGTGCGCAGGAGCCGCTACTATGAGGAGGTGGATGAGGCGAAGGCGCCTCATCGGCGTAACTACAGCTTGGGGCTAGCTATTCCTCATGTGGTGCGGCCTGTGGAGGACATCTCCCAGATGGAGCTGGATCTGATCGCCAACAACGTGCGGGAGAAGGTGTACAACAGCTCCACTGGATCCACTTGCCACCAGTGCCGCCAGAAGACGATCGACACCAAGACCAACTGTCGTAACCCGGAGTGTGTGGGGGTGAGGGGTCAGTTCTGTGGCCCATGTCTCCGTAACCGCTACGGAGAGGAGGTCCGAGATGCCCTGCTGGATCCTGAGTGGGAGTGTCCGACATGCAGAGGGATCTGCAACTGCAGCTTCTGTAGAGCCAGAGAGGGTCGCTGTGCCACTGGAGTTCTGGTCTACCTGGCTAAATACCACGGCTATGACAACGCCCATGCCTACTTAAAAAGccTTAAAAAGGAAATGGACGAGAGCCAGTAAACCACGGAGGGCGTCACCTGATTCTGGACCTGACTGACAAGCGTTGTGTTAAATATCTCTATGTTCCATAATGCAAAACGGTTAATTCTTCTATTGTTCCTGATTCTGTATTTCTTTTCTTACATTGTTTTAAATGTATAAAGTTTTACCATCAATTACGTGACGTAATTTGATGAGTCTTCCTCACTGTTTATACTGTTATGATGAATATCTTCAATGTTTATAGTTGTTTGCTTGTGATCTCACTTTTAACCTGCAAGTTGTTATAAACCCAAATATATATCAAATGTGTAAGGACTAGTTGGGCTCTATGGTAATTGTACTCAAGATTCATACATTTTTCTGTAAGAAAATTAGCTTTTAACTTCAATAAGGCTTATCTGCTGTTTTAGTCTCAGCTGTTGGAAAGTAAAAAATGTTGTCACGGTTACTCTTGACTATTTGGTAGTCTGTCACTGTCCCACAATGCCCCTGGGGTGGAGAGGACACAGTGAgccattgacccccccccccccccccccccccactgtgatATCTGACAGTGCCTGGTTATATCCTTCATTAGATAACTGTCACTAATGGTGTGGAAACAATTAGCAGTGTCTAATGGGAATCTCATACCTGTAAATCAATTCTATTAAAGCActttctcgctc

Function

GO: NA

KEGG:

id description
K23408 CDCA7, JPO1; cell division cycle-associated protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303852 lncRNA upstream 117031 49614584 ~ 49614845 (+) True G267427
TU303838 lncRNA upstream 120457 49611075 ~ 49611419 (+) True G267416
TU303807 lncRNA upstream 166684 49563888 ~ 49565192 (+) True G267385
TU303749 lncRNA upstream 174590 49556632 ~ 49557286 (+) True itga6a
TU303802 lncRNA upstream 177531 49553946 ~ 49554345 (+) True G267380
TU303899 lncRNA downstream 9011 49744473 ~ 49747702 (+) True G267471
TU303932 lncRNA downstream 56293 49791755 ~ 49794631 (+) True G267503
TU303989 lncRNA downstream 125914 49861376 ~ 49861654 (+) True G267546
TU303990 lncRNA downstream 131753 49867215 ~ 49867792 (+) True G267547
TU304034 lncRNA downstream 171000 49906462 ~ 49951847 (+) True G267579
XM_036974436.1 mRNA upstream 773 49679142 ~ 49731103 (+) True zak
XM_036974438.1 mRNA upstream 8439 49676930 ~ 49723437 (+) False zak
XM_036974434.1 mRNA upstream 55099 49629472 ~ 49676777 (+) False LOC110520113
XR_005048018.1 mRNA downstream 22355 49757817 ~ 49767356 (+) True LOC118959582
XM_021597189.2 mRNA downstream 126777 49862239 ~ 49865998 (+) True LOC110520117
LOC110504188 mRNA downstream 136345 49871807 ~ 49874217 (+) True LOC110504188
XM_036964928.1 mRNA downstream 309256 50044718 ~ 50063834 (+) True LOC118944674
XM_021584389.2 mRNA downstream 399233 50134695 ~ 50136597 (+) True hoxd13a
TU303803 other upstream 176038 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 219401 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2899632 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2899672 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2899742 46831008 ~ 46832134 (+) False LOC110520046
TU303972 other downstream 101155 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 426839 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 866840 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1163127 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1838518 51573980 ~ 51578683 (+) False LOC110520169

Expression Profile