RNA id: XM_036974438.1


Basic Information

Item Value
RNA id XM_036974438.1
length 3254
RNA type mRNA
GC content 0.45
exon number 12
gene id zak
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49676929 ~ 49731937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAACGAATTAAATTCCCTATTAATGCAGGTGTTGGTTGTTATAACATAGACTGCTACTTCATTTTAATGGTGTCGTTGGAGGTGTACCGGTTTTACCCATTGAGTGGCGCTGTTGTCATCAGAATTTGTGAAGCTCTTTGAAAAATGTTGGGATACTTCcctggttttaatgtctatggCTATTTCTCTAGCGTTCAGCACTCAGCCCAAGTCAAGGAAGAAGTTGTGCAACTAGAAATCCCGGTGTGAGGAAATCATAAACGTCACGCCCGGTTTCCAGGAAAGTGGGTTCTTTACAGTAGTTCTATGTTTACCTGCAGAAGTTAAGCTACCCATTGGATCTGTCAAACTGAATGTTTCTAGTATTTGTTGGAAAATTCAAAGTCCTCCAGACAGACGTTGATCTGGGGCTGAGTGTTATTATGAGATGTTGCCTCTCAGTGCCTCCTTCGTGCAAATCAAGTTTGATGACATCCACTTCTACGAGAACTGCGGCGGCGGCAGCTTCGGGAGCGTGTACCGAGCCAGGTGGATCCCTCAGGACAAAGAGGTGGCGGTGAAAAAGCTGCTCAAGATCGAAAATGAGGCTGAAATCCTCAGTGTACTAAGCCATCGGAACATCATTCAGTTTTATGGAGCGATCCTTGAAGCACCCAACTATGGAATCGTCACTGATTATGCCAGTGGAGGGTCCCTGTATGACTACCTGTCCAGTGCAGAGAGTGAGGAGATGGACCAGGAACAGGTCATGACTTGGGCCATGGAGATTGCCAAAGGCATGCACTATTTACACTCAGAGGCCCCGGTCAAGGTTATCCACAGAGACCTGAAGTCCAGGAATGTGGTTGTGACGGCAGACAGAGTTCTTAAGATCTGTGATTTTGGGGCGTCCCGGTTCCACTCCCACACCACACACATGTCCCTGGTAGGCACGTTCCCCTGGATGGCCCCGGAGGTCATCCAGAGCCTGCCCGTGTCTGAGACCTGTGACACCTATTCCTACGGCGTGGTTCTGTGGGAGATGCTCACCCGGGAGATTCCCTTTAAAGGCTTGGAGGGTTTACAAGTCGCCTGGCTGGTGGTGGAGAAGAGTGAGAGGTTAACCATTCCCAGTAGCTGCCCAGACAGTTTCGCTGAGCTGATGAGGAAGTGCTGGGTGACTGATCCCAAGGAAAGACCCATGTTCAAACTTATCCTTACAACCTTGGAGACCATGTCCAATGACAGCAAGCTTCCAGAGCAGTGCAACTCCTTCCTACACAACAAGGCAGAATGGAGCTGTGAGATCGAGGCCACACTCGAGAGACTGAAGAAGTTGGAGAGGGATCTGAGCACCAAAGAGCAGGAACTGAAGGAGAGAGAACGTCGCCTGAAGATGTGGGAGCGCAAGCTCATCGAGCAGTCCAACACCCCGATTAGCACTGAGTCGTTCTATGAGTCTAAGACGGAGGAGTCGAACAGTTCGGAGATGACGTGTCAGATCACATCCTCCAGTAAcggggaggtggaggggatgaGTCTGCAGGCCATGATGAAGGGCTTTGGGGACATGTTTGCCTTGGACATGGGGGGCCCCGTCCTGCACTCTGGCATGCAGGGCAACATGCAGGCCAAGCAGAACTCTTCCAAGTGCAGCAGTGTCAGAGAGGGCCGCAAAATCAACATGGCCTTGGGGATGTCAGACGACAGTGATTAGAGCAACCTGATTGGTAGCATCCGTAACATCTGTCCATCAATCACTTTGGCCTGTGTCTAAACTGTGGTCTTGCAGCAAGCTCCCATGCATATTCCTTTTCACATTACTGGTGTTATGGACACCATCTTCAAACATTAGATCATTCATTACTAATAGCTTTTTATTCcttgactgttttttttttgttgttgttgttggaacaATCCATTTTTCACACATTCTTTTGAAAAACAATAAAGCATATCCAAAGATACTATACTTGATGTAGCACAGAGATGTTCTTCTCGCCGTATGAACACAATGTATTAGAAACGGTCCTCCTACATGGCTCACATGGATGTCATTAATGCCTAATGTACTGGATGTATAGTGCCATGCTGTAAAGAGTCATGTGAGCAACTTGCATTGAGGAGGCAAAGCTTTTATGACATTTTGCTGACATTAAGATTGGCCAATTTGTTCTGAATGTGGTGGAGTGCAGTTGCTCTGATTGAGTCTCTCACCTGGACGAGAATGTACATGTGGTGTCCCTCAGCTGACCCTGACTCATgtcagcgggagagagagaaaaagtttCCTGATATCCATGTTAAACTACAGACTTCCTGTGCCCTTtttctgtatatacagtgtttggAATATTTGGATTTCAGGCCCGCAAACCATGGCTTATTGGTGTAAAGTGCACTACAGGTGTTTGTGTAGTCTCGCTTCGTGTGCTGGTTGACTGCTGCATGTTATAGATGCATATAATCAGGATGTTTGTGAGGAGTACCATAGACCTTAGACTACAACACCTTGACAGGGGTAAGTTCTCATAGACAAAAGGCAACTATTAAGGACCTTTATTCCACTAACTCTGTTATTCAGTGGTAGGTTGGCCTTTCATTCAATTATTTAGGAAGTAATAACAGTATCTCTTTGGAGAGATATGAAATATTCTTTAGATGGCTTCTCTAAGCTAATGATTATCTTTCAGCTAAACATGTATGCATCTGCACCAACAGTTTTGACCACAGACAAAAGTGTGTTTAACCATGCCCAAACTGAGCCTATTGAAGCTCACCTTAACAAGTGCCATCACCAAATGCCCTGTAAATTCTGCTATTTATGGTCATATGGGACCTCATCTCTTCTAAACATATCCAATATGGAGGCTATTTCTGTCTGACTCTGGCCCAACAGGTTCCACCTATTTCTACTTAGTTGATGTATGTTTTTGTATTCTGTTGTGTAGTTCTTAAACCTAGTCACTCCAAAACACATCCATTGACATAGACAATAACCAACCGATACACCTCCTGATGTGAAAGTCAACCACTTTGTAAGGTATTTCAGGACATCGAATACCCAGAGTTGCAATATGATCTATGCAAACTTCAGCACCTTGGATTAGTCCAATTCCTTGGATTATTCCGATAGAGTTATGGCACACCATTAAAGAGACACTATTAGACAGACTGCTGTTTGATATGAACATATTTTTCTGCAACCTCTACTGTTCCTtgtttttcaataaacattttctCATTAAACTTCCTGCTTTGGTTCTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303852 lncRNA upstream 62085 49614584 ~ 49614845 (+) True G267427
TU303838 lncRNA upstream 65511 49611075 ~ 49611419 (+) True G267416
TU303807 lncRNA upstream 111738 49563888 ~ 49565192 (+) True G267385
TU303749 lncRNA upstream 119644 49556632 ~ 49557286 (+) True itga6a
TU303802 lncRNA upstream 122585 49553946 ~ 49554345 (+) True G267380
TU303899 lncRNA downstream 21036 49744473 ~ 49747702 (+) True G267471
TU303932 lncRNA downstream 68318 49791755 ~ 49794631 (+) True G267503
TU303989 lncRNA downstream 137939 49861376 ~ 49861654 (+) True G267546
TU303990 lncRNA downstream 143778 49867215 ~ 49867792 (+) True G267547
TU304034 lncRNA downstream 183025 49906462 ~ 49951847 (+) True G267579
XM_036974433.1 mRNA upstream 153 49629319 ~ 49676777 (+) False LOC110520113
XM_021597179.2 mRNA downstream 8439 49731876 ~ 49735462 (+) False cdca7a
XM_021597181.2 mRNA downstream 8439 49731876 ~ 49735462 (+) True cdca7a
XR_005048018.1 mRNA downstream 34380 49757817 ~ 49767356 (+) True LOC118959582
XM_021597189.2 mRNA downstream 138802 49862239 ~ 49865998 (+) True LOC110520117
LOC110504188 mRNA downstream 148370 49871807 ~ 49874217 (+) True LOC110504188
TU303803 other upstream 121092 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 164455 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2844686 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2844726 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2844796 46831008 ~ 46832134 (+) False LOC110520046
TU303972 other downstream 113180 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 438864 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 878865 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1175152 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1850543 51573980 ~ 51578683 (+) False LOC110520169

Expression Profile