RNA id: XM_036974434.1


Basic Information

Item Value
RNA id XM_036974434.1
length 3437
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC110520113
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49629246 ~ 49676777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTCGTCAAGGAGATATTGGTACCAGCTGGTATGCTGTCCTCTTTGGCTCACTTGAAGTCAAAGTGTCAGAGACAGCAAATCATCAGGATGCGGTTACGATTTGCAATCTGGGGATTGGGACAGCATTTGGGGAGTCGATCCTGGATAACACCCCTCGGCACGCCACCATTGTTACCCGGGAATTCAGTGAACTCCTCCGCATTGACCAGAGGGAGTTCAAGTCTCTGTGGGAGagatatCGTCAGTGCATGGCTGGACTGCTAGCCCCATCTTATGGAGTTATGGAAAGTGGTGGACCCAGCCCTGACAGAATGCCAGACAAAGAGAACATAAGCAACAACTCTTTTGGATCCATCTCTAAACATCTGAGTAAGGTCCCATCTGAGAAGATCATGCGAGCAGGGAAGGTTCTACGTGATGCCATCCTCTCCAGAGCTCCCCACATCATCCGAGACAGGATGTACCACCTGAAGACATACAGGCAATGCTGTGTGGGAACAGagctggttgactggcagatgcAGCAGAGCTCCTGTGTTCACTCTCGCATTCAAGCAGTGGGCATGTGGCAGGTGCTGCTGGAGGAAGGAGTTCTCAACCACGTGGACCAGGAGCTGACCTTCCAGGACAAGTATCTGTTCTACCGTTTCTTGGATGATGAGCAGGATGACGCTCCCCTGCCCACTGAGAAGGAGGCCAGGGAGAGCGATGAGGAGCTGCAggagaccctcctcctcctctcccaaatAGGCCCTGACGCACACATGCGCATGATCCTGAGGAAACAGCCAGGACAGAGGACAGCAGATGATTTGGAGATAATGTATGAGGAGCTGCTCCATATAAAAGCCTTATCGCACCTATCCACCACTGTAAAGAAGGAGTTAGCCGGAGTCCTGATCTTTGAGTCCCATGCCAAAGCAGGAACCGTGTTGTTCAATCAAGGGGAGGAAGGCACATCGTGGTACATCATTCTAAAGGGCTCTGTAAACGTTGTCATTTATggaaagGGGGTTGTTTGCACGCTACATGAGGGAGATGACTTTGGGAAGCTTGCCCTGGTCAACGATGCCCCCCGCGCCGCCTCCATTGTCCTACGAGAGGATAACTGCCACTTCCTACGTGTGGACAAGGAGGACTTCAATCGGATCCTCAAAGATGTGGAGGCCAACACGGTGCGTTTGAAAGAGCATTATCAGGATGTTCTGGTCCTGGAGAAGAGCCCCAGCAGCCAGGCCTCCACCCAtggctccaccaccaccacagccacCTCCTCACACTATAAATACACTGTGATGTCCGGGACACCGGAGAAGATTCTGGAGCACTTTCTGGAAATGATGCGACTGGACTCTCACCTTAACGAATCAGatCCAGCTCTGGACGACTTTCTGCTCATGCACTGCGTCTTCATCCCTAACAGTCAGCTGTGTCCGGTGCTCATGGCCCACTACCATGCTGAGGCGTCCCAGGGCTCAGAACAGGAGCGTCTTGACTATACCCTGAACAACAAGCGGaaggtgatcaggctggtgctgCAGTGGGCCTCAGTACATGGAGACCACCTGCAGGAGGAGGATGCCTCCCTCGCCTTCCTAGAGGAGTTCTTTGTGTCTGTATCTGATGATGCCAGGGTGATTCCTGCTCTGAAAGATCAACTCCCAGAGTTAGAGAAGATCGTTAAAAACAACTCTGATGACGCCAGATCCTCTCAACAAAAGCACAAAATCCTGTTGAGGCAGTTCAGCATGGGGGATGAGAAGCTGCAGAAACGACAGGCCATCAAGAGTAATGATGAGAATAAAGTGGTGCTAAAACCCAACGATATTTCCGTCTTCTCCACACTCAGCATCAACGGCCGTCTATTTGTCTGTCCCGGGGATCAACTGGATTCATTGATGCCCTTACCAGAGCAGGAAGGACCCTCCACAGGCTCCCTGGGCAGCTTTGAGTTGATGAGCTCTAAAGACCTGGCCTACCAGATGACTCTCTACGACTGGGAACTCTTCCACTGTGTACACGAGCATGAGCTGATCTACTATACATTTGGGAGGAAGAACTTCAAGAAGACTACGGCCAACATGGACCTGTTCCTCAGGAGGTTCAATGAGATTCAGCTGTGGGTGATCACGGAGATCTGTCTGTGTGCTCAGCTCAGCAAGCGTGTTCAGCTGCTCAAGAAGTTCATCAAGATCGCTGCCCACTGTAAGGAGTATAAGAACCTCAACTCCTTCTTCGCTATTATCATGGGCATGAGTAACCCAGCCGTGAGCAGACTGAGTCAGACATGGGagAAACTACCCAGCAAATTTAAGAAGTTTTATAGCGAATTTGAAAGCTTAATGGACCCGTCCAGGAACCACCGGGCGTACCGGctcactgtggccaagctggaCCCGCCCATCATTCCCTTCATGCCGCTGCTGATCAAAGACATGACTTTCACTCATGATGGAAACAAGACGTTCATTGACAGTTTGGTCAATTTTGAGAAAATGCGAATGATCGCTAACACAGTGAGAATAGTGAGATACTGCAGAAGTCTGCCATTCAGTGCCGAACCATCTCAGACCAGTAAGAACCACCTGGACGTGAGGAGCTATGTGCGCCAGCTGACTGTGATTGACAACCAGAGAACACTATCTCAGTTCTCCCACAGACTGGAACCACGCAGGACCTGAAGCTTGGACGGACACTGGACAGACATGTCACATGCTGCTGCTCTACTGCCAACAATAAGCTTGCTTTATATGTTgtaccagtacacacacacatattcacttTGCTACATGGAACTTCACATTATTATACATGCAGTATAGTCAAGTAAGCTGCAGCTGCAGAGTTCATCGGCTCCACCTTCAACTGTATTTCAAATGTCAGTATCATTTCTGCTGCTTGTTTTCCTTTGTGTATCGTTTTCATCTTTGTTATCAATGGGCAGCAGTCACTCCGCTTTAAATTTCACCAAGTATTTTCAAATTCATCTCATTCTCATGTCCCTGAAGCTCTATTTTAATTCTTTGAAGTCACCAGCCCCACGAAAAGGACACAATCTATAAAGCGAATTATCGTTTGGAAATAATCGTCCGTTTGATTGTTGTACAATAATCTGTGAGGTTTATGTTAAACGGATAACTTTTCCAGGTGGAAACATTGGCTCTTACTTCACTCTCTTAACCTCCTAAATTCCAAATCCTGATATTCAGATGTTGTTTCCAATCTTTTTTTCTAAATCAGATTTGATGTTTTTTTATTACACATGTACAATGTGTTCATATATCTATTATGGCCTCAGCATGCAATGGTTTGAGATGTTGGGCTggggtgtacagtatgtgagcACGTTCCTCTTTGAAAGTCTCTAAGGTAACCGTTTTCTGCAAACATTTTAGCCATGTGTATTCTGTAAATATTAAAATGAATTTGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303852 lncRNA upstream 14627 49614584 ~ 49614845 (+) True G267427
TU303838 lncRNA upstream 18053 49611075 ~ 49611419 (+) True G267416
TU303807 lncRNA upstream 64280 49563888 ~ 49565192 (+) True G267385
TU303749 lncRNA upstream 72186 49556632 ~ 49557286 (+) True itga6a
TU303802 lncRNA upstream 75127 49553946 ~ 49554345 (+) True G267380
TU303899 lncRNA downstream 67696 49744473 ~ 49747702 (+) True G267471
TU303932 lncRNA downstream 114978 49791755 ~ 49794631 (+) True G267503
TU303989 lncRNA downstream 184599 49861376 ~ 49861654 (+) True G267546
TU303990 lncRNA downstream 190438 49867215 ~ 49867792 (+) True G267547
TU304034 lncRNA downstream 229685 49906462 ~ 49951847 (+) True G267579
XM_021597164.2 mRNA upstream 65635 49560085 ~ 49563837 (+) True pdk1
XM_021597162.2 mRNA upstream 71935 49529979 ~ 49557537 (+) False itga6a
XM_036974424.1 mRNA upstream 71935 49546189 ~ 49557537 (+) False itga6a
XM_021597163.2 mRNA upstream 73315 49529978 ~ 49556157 (+) False itga6a
XM_036974423.1 mRNA upstream 158726 49464651 ~ 49470746 (+) True dlx1a
XM_036974435.1 mRNA downstream 152 49676929 ~ 49731937 (+) False zak
XM_036974438.1 mRNA downstream 153 49676930 ~ 49723437 (+) False zak
XM_036974436.1 mRNA downstream 2365 49679142 ~ 49731103 (+) True zak
XM_021597179.2 mRNA downstream 55099 49731876 ~ 49735462 (+) False cdca7a
XM_021597181.2 mRNA downstream 55099 49731876 ~ 49735462 (+) True cdca7a
TU303803 other upstream 73634 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 116997 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2797228 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2797268 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2797338 46831008 ~ 46832134 (+) False LOC110520046
TU303972 other downstream 159840 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 485524 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 925525 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1221812 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1897203 51573980 ~ 51578683 (+) False LOC110520169

Expression Profile