RNA id: XM_021597164.2


Basic Information

Item Value
RNA id XM_021597164.2
length 2401
RNA type mRNA
GC content 0.44
exon number 11
gene id pdk1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49560085 ~ 49563837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTTTCCCTGTCTCATGGACCAAACTCTAGTACAGTAGGAGGCGGTAATAcaccataacgttggatgccaaccACCGACAAAAACCCCACCGAAGAAGAAGATGAAGCTCGTTCGTGTTTGTTTTGATTGCTAGCATGCTGCTGGAAGTTAGCTAGCACAACAGAACCAATGCATGATTCTTGAAGCGATATATGGGTTGTTCAATGTAGAAAGTAACGTTATAATACGCTAAACGAATACgtataaatacatgttttaagaTAATGTAAATAGCTCACTTTCTAGGAACTTTTGCGAACAGTTCCAGTCGACTTGAATGAATGACATGCTGGagtactaacgttagctagctaaataagcTGGCTATCTCCACTGAGCTTTTGTCATTTATTGTAAACTGTAACTGTTACCTAGCCTAATTGTTTACTTGTGGACCGTGATGGCTGCAAACGAACTTCACaaaagctaactagctagctgttaAAAGCTAGCTTAGCTACATATCTCGCTGCGTTCATCAGATGTCAACAATGCCATGGGCAATCGGCTGTTCAACACCGTCAACTGAATAATTTATATCCACGCCCATTTATCAACTGCGCTAAATCGATCAAAATGAGGATTCTACGGGCCTTGATGAGTAACGCCGCTTCAATGGGAAAGCATATTGATTACTACTCCAggttctccccttctcccctctcaaTGAAACAGTTCTTGGACTTCGGGTCTGGTGAAAATGCATGCGAGAAAACATCGTTTGCATTCCTCAGACAGGAGCTACCTGTGAGGTTGGCAAACATAATGAAGGAGATCAACTTGTTACCTGATAATCTGCTAAAGACTCCATCAGTCCGGTTGGTACAGAGTTGGTACATGCAAAGTCTTCAAGACATTATTGAGTTCAAGGAGAAAGATGCCGATGATGAGAAAGTAACATATGAtttCACTGATGCTGTTATAAAGATCCGAAACCGTCACAATGACGTCATCCCGACAATGGCCCAGGGAGTTGTGGAGTACAAGGAGACCTATGGCACAGACCCCATCGTCAGCCAGAACGTTCAGTATTTCCTGGATCGCTTCTACATGAGCAGAATATCCATCAGGATGCTACTTAACCAGCACACCCTGCTCTTTGGTGGGAAGGTGAGGGTAAACCCAGCGCATCCTAAACAGATTGGCAGTATTGATCCGCACTGCAGTGTTACTGAAGTAGTTAGGGATGCGTATGAAAATGCAAGAAATCTTTGTGATCGGTATTACATGAACTCTCCTGAGTTGGTACTGGAACAATTCAATGTGAAAGATGGAAAGCCAGTGACTGTAGTGTATGTGCCATCCCATCTCTACCACATGGTATTTGAACTTTTCAAGAATGCCATGAGAGCCACCATGGAGTTGTATGGCGACTCTATGGACTATCCTCCTGTACATGCCCAGGTGGCCCTGGGGAGTGAAGACCTGACAGTCAAGGTGAGTGATCGCGGAGGTGGGGTCCCTCTGAGGAAGATTGAGAGGCTGTTCACCTACACCTACTCCACCGCCCCCCCGCCCAGCATGGACGGCCAACGCAGCCCTCTGGCTGGATATGGGTATGGCCTGCCCATCTCTCGATTATATGCCAGATACTTCCAAGGTGATTTGAAGCTGTACTCTCTGGAGGGCTATGGCACCGATGCTGTGATATATATCCGGGCATTGTCCACGGAGTCCATCGAGAGGCTTCCTGTTTACAACAAGTCAGTCTGGAAGCACTACAAGACCATGCACGAGGCAGACGACTGGTGTGTTCCAAGCAAGGAGCCCAAGGACATGACAACGTTCCGTAGTTTTTAGGCCTAGATGCCTCCTGGTTAGACTAGTGTCATTTGCTAGATGACTTACTGTACATGAATTGCTTTGTGTGAGTGACGCTATAGCTGTTCCACTGTGGGAAGCAATAGGTCAAAACCCTTTGCACCTTTACTGGTTGTATGGATACATAACTAGCGAAGTTCTAGTGCCATACGTTTGTGTTGCTTTTTCAAAACTGACATGTTTATTATGTGAAAGGATTGCTTGGTTTCTAGCATTTTGCTGAAAGGGGAAAAAGGGTGAATATTGCTTGTTATTTATACTGAGTGTTCTCCACTGGCTGAAGATGTTTGTTAAAGTTGTGCAGCTACGAGGTCTTTTTCCATGTCCTCCGCTATCGCTGAAGGAATGTTATTTTATCGACAGTATAGAAGTACATGTTTTCTTTGTCCTCCAGTGATACATGACAGAGAAATAAAAATATAGTACTTGTTCTAACTGATGTGTTATCTGTCAAGTGTTACTGACCTTAGTGGAACTTTCATCTCATGATTGCAGAACCATTAGACCTTCCAATAAAGCACAAAATACACCCACAAAA

Function

GO: NA

KEGG:

id description
K12077 PDK1; pyruvate dehydrogenase kinase isoform 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303749 lncRNA upstream 2799 49556632 ~ 49557286 (+) True itga6a
TU303802 lncRNA upstream 5740 49553946 ~ 49554345 (+) True G267380
TU303752 lncRNA upstream 8201 49551497 ~ 49551884 (+) False itga6a
TU303799 lncRNA upstream 19751 49539848 ~ 49540334 (+) True G267377
TU303797 lncRNA upstream 20806 49538890 ~ 49539279 (+) True G267375
TU303807 lncRNA downstream 51 49563888 ~ 49565192 (+) True G267385
TU303838 lncRNA downstream 47238 49611075 ~ 49611419 (+) True G267416
TU303852 lncRNA downstream 50747 49614584 ~ 49614845 (+) True G267427
TU303899 lncRNA downstream 180636 49744473 ~ 49747702 (+) True G267471
TU303932 lncRNA downstream 227918 49791755 ~ 49794631 (+) True G267503
XM_021597162.2 mRNA upstream 2548 49529979 ~ 49557537 (+) False itga6a
XM_036974424.1 mRNA upstream 2548 49546189 ~ 49557537 (+) False itga6a
XM_021597163.2 mRNA upstream 3928 49529978 ~ 49556157 (+) False itga6a
XM_021597160.2 mRNA upstream 89339 49464651 ~ 49470746 (+) False dlx1a
XM_036974421.1 mRNA upstream 89339 49464651 ~ 49470746 (+) False dlx1a
XM_036974425.1 mRNA downstream 65409 49629246 ~ 49676777 (+) False LOC110520113
XM_036974429.1 mRNA downstream 65409 49629246 ~ 49676777 (+) False LOC110520113
XM_036974430.1 mRNA downstream 65409 49629246 ~ 49676777 (+) False LOC110520113
XM_036974431.1 mRNA downstream 65409 49629246 ~ 49676777 (+) False LOC110520113
XM_036974432.1 mRNA downstream 65481 49629318 ~ 49676777 (+) False LOC110520113
TU303803 other upstream 4247 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 47610 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2727841 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2727881 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2727951 46831008 ~ 46832134 (+) False LOC110520046
TU303972 other downstream 272780 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 598464 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1038465 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1334752 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 2010143 51573980 ~ 51578683 (+) False LOC110520169

Expression Profile