RNA id: TU303797


Basic Information

Item Value
RNA id TU303797
length 390
lncRNA type intronic
GC content 0.39
exon number 1
gene id G267375
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49538890 ~ 49539279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtgtattgattttaagaaagacattagtgtttatggttaggtacatttgtgcaaagattgtgcttttttcgggaatgcgcttttgttaaatcatcacccttttggcgaagttgaagtaggctgtgattcgatgataaattaacaggcaccacattgattatatgcaactcaggacaagctagttaacctagtaatatcatcaaccatatgtagttaactagtgattatgcgaagattgattgttttttacaagataagttaaatgctagctagcaacttaccttggctccttgcagccacaaggtccttttgacgtTGCACTCGTgcaacaggtggtcagcctgccacgcagtttcctcgtggattgcaatgttatcggccataatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303796 lncRNA upstream 943 49537493 ~ 49537947 (+) True G267374
TU303794 lncRNA upstream 2376 49536313 ~ 49536514 (+) True G267372
TU303787 lncRNA upstream 11584 49527043 ~ 49527306 (+) True G267365
TU303775 lncRNA upstream 35753 49502717 ~ 49503137 (+) True G267353
TU303774 lncRNA upstream 36192 49502496 ~ 49502698 (+) True G267352
TU303799 lncRNA downstream 569 49539848 ~ 49540334 (+) True G267377
TU303752 lncRNA downstream 12218 49551497 ~ 49551884 (+) False itga6a
TU303802 lncRNA downstream 14667 49553946 ~ 49554345 (+) True G267380
TU303749 lncRNA downstream 17353 49556632 ~ 49557286 (+) True itga6a
TU303807 lncRNA downstream 24609 49563888 ~ 49565192 (+) True G267385
XM_021597160.2 mRNA upstream 68144 49464651 ~ 49470746 (+) False dlx1a
XM_036974421.1 mRNA upstream 68144 49464651 ~ 49470746 (+) False dlx1a
XM_036974423.1 mRNA upstream 68144 49464651 ~ 49470746 (+) True dlx1a
XM_021597158.2 mRNA upstream 108808 49416164 ~ 49430082 (+) False hat1
XM_036974424.1 mRNA downstream 6910 49546189 ~ 49557537 (+) False itga6a
XM_021597164.2 mRNA downstream 20806 49560085 ~ 49563837 (+) True pdk1
XM_036974425.1 mRNA downstream 89967 49629246 ~ 49676777 (+) False LOC110520113
XM_036974429.1 mRNA downstream 89967 49629246 ~ 49676777 (+) False LOC110520113
XM_036974430.1 mRNA downstream 89967 49629246 ~ 49676777 (+) False LOC110520113
TU303780 other upstream 26415 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2706646 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2706686 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2706756 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 3354086 46184134 ~ 46184804 (+) True G263859
TU303803 other downstream 15219 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 297338 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 623022 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1063023 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1359310 50898589 ~ 50900277 (+) True G269291

Expression Profile