agps (LOC106586249)


Basic Information

Item Value
gene id agps
gene name LOC106586249
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50338167 ~ 50377090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974478.1
TCACTCTACCGTCGTCTTCGTTAGGCTTACCGCTCGAACACACACATTCTATCCCTATGCTGACCTCTGACAGCTGCCTCTCCCTGCACAAACACGGAAGCAGCATGGCGTCAGACAGCAACAGCTCCGAGAGCCAACGAATTGCACAGCAAAGATTGAGGATAATTGCCGGGCATTTACAGAAACATAAGGACGACGACTCGGGAACTATCGCAACTGAATGCAAAGCTGAAGCGAATAAAGGGACGGTGCCGAGAAAGAGGCAGGAGATTATGAAGTGGAATGGCTGGGGGTACAGTGACTCCAAATTCCTATTCAATAAGAAGGGTCAAGCAGAATTCACAGGCAAAAGGTATAGGCTAAGTGGGATGGTCCTGCCCAGTTTGCAGGACTGGTTTGAAAACACCTTTGGCGCCAGTGTGAACCATAAAAGCCCCGCGACACCCGCCCTGAATGCCAGCGCTGTTCCACCGGCCAGTCTGAACGAGGCGTTCGTTGAGGACCTGAAGGCCACGGGCATCCCCTTCTCCCATGAGGCCGAGGACAGGGTGTTCCGTGCCCACGGTCATTGCTTACATGAAATCTTTGCTCTCAGAGAAGGGAAGAAATTTGAGCGGGTTCCGGACATGGTGGTGTGGCCAAACTGCCACAGCGACGTGGTGAAAATTGTGGAGCTGGCATGCAAGCACAATGTTTGTTTGATACCGTACGGCGGAGGGACCAGTGTGACCAGTGCTCTAGAGTGCCCCCCGGAGGAGACTCGCTGCATCGTCTCTCTGGATACTTCACAGATGAACCGCATTTTGTGGATCGACGAGAAGAATTTAGTCGCCCACGTTGAAGCTGGCATCATCGGTCAGGATCTGGAGAGATTACTCAACGAGAGCGGCTACTGCACGGGGCATGAGCCCGACTCCATGGAGTTCAGTTCCCTAGGAGGCTGGGTGGCCACGAGGGCATCGGGCATGAAGAAGAACGTATACGGCAACATCGAGGACCTGGTGATCCACATAAAGGTGGTGACCCCTCGAGGGGTGATAGAGAAGAGCTGCCAGGGGCCACGCATGTCCACTGGGCCAGACATCCACCACTTCATCCTGGGCTCAGAAGGAACTCTTGGTGTGGTTACCGAGGTAACGATGAAGATCCGGCCAATCCCCGAGTACCAGAAGTACGGCTCGGTGGTCTTCCCAAACTTTGAGGCGGGAGTGGCCTGCTTACGAGAGGTAGCCAAGCAGaggtGTGCACCTGCATCCATCCGGCTCATGGATAACGAACAGTTTCAGTTTGGTCATGCCCTGAAACCTCAAGTGTCGTCCATTTTCACAAATTTTGTGGAAGGGTTAAAGAAATTCTACATCACCAAGTTCAAAGGTTTCGACCCCCACCAGTTGGTTGTTGCCACCCTGCTGTTCGAAGGGGACCGCGAGAGGGTCTTGCAGCACGAAAAACAAGTTTACGACATTGCTGCAACATTTGGGGGCCTGGCAGCTGGAGAGGACAATGGACAGAGAGGCTACATTCTGACCTTCGTCATCGCTTACCTCCGGGACTTGGGGATGGACTACTACGTGGTCGCAGAATCATTTGAGACATCGGTGCCTTGGGACAGTCAGTTTGAAGAGCCCCAAAGACAAGTATCTCAAcccccactccctctctgacATTCACCTTCATGCCTGCCTTCTCCCTCCATTAACTGGCTGTGCGTGGGAGGGAAGACTGCCTCTCCAGCCCCAGCCTGACTCTGTGCAGGGGGGAGcgacagggaaagagggagacatGGCCAGTGTGATGCTTTCATGTGTGCTGCTGGGTGTGAGATTGAACATGAATATCCAACATACAGTGTTGGAAATTCAGTGTAAAAAACCTTCCCATTATGAAACCACACAGTTCTTCCCACACATGAACAAAAAAATGACTGACTCCCTTGCACCTTAAAGCGATATCTCAGGagagtacaccccccccccttttttccaCAGACACacgggcagacacacacacacacacacacgcgtgctcAGCACCCCACTGTGTAGACTGCCTGATGGGGGTTAGCGGGCGAGCATATGTTCAGGGCTCAttacccctcttcctcctccatctctccacactaGGCTGCACATGCCTGGGAGTGACGGCCATTAGAGAACAGAGTGAGCCAGTCTCTCCCAGCTACAAATACCGAGCACTACAGTCTCCATAATGGTGTGAGGTTCTCcaccttgtctgtctctctgtctgtgtaccCCACAGTGCGGGGCCAGAGGCCTTCTCTTCACATAACTCTCGACAGCTCAGCTCCACCTGTCGTACTGGGTTAAATCATGGGGctgtgcaccctattccctatatagtgcattactggGTCTCAGACAGGGCTTTCATCAGGTCTTAACAGTCTGCTACTCTTCAGGAGAACATGCTAGTCTTTATGtttctctc
>XM_036974477.1
ACTCTACCGTCGTCTTCGTTAGGCTTACCGCTCGAACACACACATTCTATCCCTATGCTGACCTCTGACAGCTGCCTCTCCCTGCACAAACACGGAAGCAGCATGGCGTCAGACAGCAACAGCTCCGAGAGCCAACGAATTGCACAGCAAAGATTGAGGATAATTGCCGGGCATTTACAGAAACATAAGGACGACGACTCGGGAACTATCGCAACTGAATGCAAAGCTGAAGCGAATAAAGGGACGGTGCCGAGAAAGAGGCAGGAGATTATGAAGTGGAATGGCTGGGGGTACAGTGACTCCAAATTCCTATTCAATAAGAAGGGTCAAGCAGAATTCACAGGCAAAAGGTATAGGCTAAGTGGGATGGTCCTGCCCAGTTTGCAGGACTGGTTTGAAAACACCTTTGGCGCCAGTGTGAACCATAAAAGCCCCGCGACACCCGCCCTGAATGCCAGCGCTGTTCCACCGGCCAGTCTGAACGAGGCGTTCGTTGAGGACCTGAAGGCCACGGGCATCCCCTTCTCCCATGAGGCCGAGGACAGGGTGTTCCGTGCCCACGGTCATTGCTTACATGAAATCTTTGCTCTCAGAGAAGGGAAGAAATTTGAGCGGGTTCCGGACATGGTGGTGTGGCCAAACTGCCACAGCGACGTGGTGAAAATTGTGGAGCTGGCATGCAAGCACAATGTTTGTTTGATACCGTACGGCGGAGGGACCAGTGTGACCAGTGCTCTAGAGTGCCCCCCGGAGGAGACTCGCTGCATCGTCTCTCTGGATACTTCACAGATGAACCGCATTTTGTGGATCGACGAGAAGAATTTAGTCGCCCACGTTGAAGCTGGCATCATCGGTCAGGATCTGGAGAGATTACTCAACGAGAGCGGCTACTGCACGGGGCATGAGCCCGACTCCATGGAGTTCAGTTCCCTAGGAGGCTGGGTGGCCACGAGGGCATCGGGCATGAAGAAGAACGTATACGGCAACATCGAGGACCTGGTGATCCACATAAAGGTGGTGACCCCTCGAGGGGTGATAGAGAAGAGCTGCCAGGGGCCACGCATGTCCACTGGGCCAGACATCCACCACTTCATCCTGGGCTCAGAAGGAACTCTTGGTGTGGTTACCGAGGTAACGATGAAGATCCGGCCAATCCCCGAGTACCAGAAGTACGGCTCGGTGGTCTTCCCAAACTTTGAGGCGGGAGTGGCCTGCTTACGAGAGGTAGCCAAGCAGaggtGTGCACCTGCATCCATCCGGCTCATGGATAACGAACAGTTTCAGTTTGGTCATGCCCTGAAACCTCAAGTGTCGTCCATTTTCACAAATTTTGTGGAAGGGTTAAAGAAATTCTACATCACCAAGTTCAAAGGTTTCGACCCCCACCAGTTGGTTGTTGCCACCCTGCTGTTCGAAGGGGACCGCGAGAGGGTCTTGCAGCACGAAAAACAAGTTTACGACATTGCTGCAACATTTGGGGGCCTGGCAGCTGGAGAGGACAATGGACAGAGAGGCTACATTCTGACCTTCGTCATCGCTTACCTCCGGGACTTGGGGATGGACTACTACGTGGTCGCAGAATCATTTGAGACATCGGTGCCTTGGGACAGGGTGTTGGACCTTTGCCGGAATGTCAAAGAGCGTATTAACCGAGAGTGTAAAGAGCGAGGGGTCCAGTTTCAACCCTTGACCTCATGCAGAGTGACTCAGACCTATGACGCTGGCGCGTGTGTTTACTTCTACTTTGCCTTCAACTACAGAGGACTGGCGGACCCAGTACATACATATGAACGAGTGGAGCACGCCGCTAGAGAGGAGATCCTAGCCAATGGAGGAAGCCTCTCGCACCACCACGGAGttgggAAACTTCGGAAGGAGTGGATGAAGGAGAGCATCTCCAGCTTGGGTGTCGGGATGCTCCAGTCCGTCAAGGATTATGTGGACCCAGATAACATTTTCGGCAACCGAAACCTCCTCTAATTTACTCCTTGCTTTGTTTTCCACCTTTTTATCTTCACACCTTTTCTCACAGCCTCTCGTGCAACTGGCTTTAACAGTTACTAAAATGTGAAATTGACACGAAAAGAAATATAAacgtcccccccccccgcctccttCTGTATGACTTGAGTTGCGCTGTCATCGTCAGACGTGGTTCCATTCCTAGGGTGCGTGTCTGTCTGGTTCTTGAGGAAAGCAATAAGCCGGTCACCTTTCACTTTCCTCGCGCTACATTCTGTTGCAGGCGGGTAACAATAATCGTCTACGATTCATTTTTGACGATCATTGTTTCAAAAGGCCTCGGCCCTTTCCAGAGTGTATCATACTAACTACAGCACGGTGATTGTGTACTGTTGCTCGTTTCAGTCACGTGTACAGCACGCTATAGGAATGGCCTTTCAATACCGTACATGATGCGAGCTAACTTTTGTGATCCCATGTTTCCCATTTATTAATTCATGAATTGTTTCCTACGACTGATGCCATCTTCACTAACTTAATTAGTATTTGTACACGTTGTTTATTCACCTGTGTTTGGCACTACTTTAGCGGTAAGTCTGAGATGAACGCACTCTCTAAATCCCTGTGCCTTTCTGAAGacgtctccctttcctcctcatATACTCCAGGTGCAAAGGTTACCGACTGGAAGCTTGACtggtttgtctttttttttttttttatggcatCCTGTTTCTTCCCTAATAATGACCATGCCCTTCATTCGAGATTTCTCTGTTTCCAATTGGTCTTTGTTTCTCAACTCAAGCCCTCATGCCTTTTTAGTTATGACTTAGAACGATGAATTATTGCCACAAGAGCTGTGTATTTTGTTTGGATCTAAACATGTACCTACCTAGGAGTACTTACATTATGCTTGAGTGGTGCCTACTGAAAATTGACCTCAGGGTTCAAACGTCCCGACCCTAAAACCTTAGCTATTACGTTAAACTGTCATATTGAAGAAACTATGACAAGGTTAGATGACGCATCTACCAACtcatattattattgtttttgtattttctgAACTAGATTTTAACCTTGCATGGTCTTTGCTTGTCATATAGAGTTCAGTTTGTGGACAAAGCCAATATACTTGGATCGTACATGCTTTAGTGTGTACTTTAGTGttaacaggttacagacaacTGAATCCCAATGCCCATGTTTGTACCAAAGACTTTTCACACAACCCTTTCACCATGCAAACATACTGGATGTATATGTTTGTACATGTTGTATAGTTAAATACATTTAGTATTACATTAACATTTATATATCCTGATACTTTTTTTATTATTCATATATGCAAGTACCCAGAAACCATCTCTAGAAATATCCAAAAATGTATAACTGTTACTGTAAGTATTACATGTACAGTACTTATTCCTGTTCATATCAGACAAAACTTCATTAAAATGTAATTACAATTGTCACTACTTCAAAATAAGTTGCTTGTATTTGGATGTATTTACACACAAATACATCAGAATTCATCGCTAGTCTGCTGAGTGTCCCAGTATTATGGTTTTGTTTGAAAGGATACATTTGAGTCAAACAAAGTTGTACCTTTGTCACTTAACGATGATTGTGTAGCTAAGTTTGGCCTCTCTTTTGGAGGCATGTGTTGATGTTGTGGCCAATCCTGATCTCGCAGACATGGAATCTACTGTGCGCGGTGCTAGAGAAAGATACATGAAATGTTGTTGCGACCATTTTCCTGTCACTACTACTGTATGACTTTGTTCCTCCTGTTCCCAAGCTAGCCTCACAGCTTTCCCACAGTGCATTGTGTCACCCTATGCCACCTTCCTGCCCAAGTTTCTCATCTCCAGCTCCAATAAACGTTTTGCCTCAATGAAACGTCAATGAAGGAAATGGTGGGGGCCCAGACAGTATTTTCTGATCAGTTTCATGCTTTTACGTCTTGTGATGGTATCGAAAGAGAACTTAACGAGAGCTTGAAATTTGAATGTTTGTTATTTTCCACTTGATAGTATTAACATTCAAGTACATTTTGTTAATGCTGTTTTGTGCAAtaaatttaaataaaaacaaGCGGTTGTTGTA

Function

NR:

description
alkyldihydroxyacetonephosphate synthase, peroxisomal-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0008609 alkylglycerone-phosphate synthase activity molecular_function

KEGG:

id description
K00803 AGPS, agpS; alkyldihydroxyacetonephosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974478.1 False 2451 mRNA 0.53 17 50338167 50367192
XM_036974477.1 True 4074 mRNA 0.46 20 50338169 50377090

Neighbor

gene id symbol gene type direction distance location
LOC110520136 NA coding upstream 2259 50334300 ~ 50336340 (+)
LOC110520134 ro32 coding upstream 16873 50316070 ~ 50321294 (+)
LOC110505268 hoxd1aa coding upstream 149473 50187165 ~ 50188694 (+)
hoxd3a hoxd3 coding upstream 153840 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding upstream 165770 50169601 ~ 50172397 (+)
osbpl6 LOC106586252 coding downstream 77949 50455039 ~ 50519865 (+)
gpr1 LOC106586257 coding downstream 211868 50588958 ~ 50592305 (+)
LOC110520148 LOC106586260 coding downstream 218526 50595616 ~ 50601655 (+)
LOC110520146 ino80d coding downstream 224893 50601983 ~ 50618761 (+)
LOC110520157 LOC106586094 coding downstream 580924 50958014 ~ 50959445 (+)
G268941 NA non-coding upstream 13209 50324683 ~ 50324958 (+)
G268936 NA non-coding upstream 13586 50323282 ~ 50324581 (+)
G268939 NA non-coding upstream 15021 50322769 ~ 50323146 (+)
G268938 NA non-coding upstream 15625 50321487 ~ 50322542 (+)
G268994 NA non-coding downstream 10080 50387170 ~ 50387393 (+)
G268997 NA non-coding downstream 12856 50389946 ~ 50390157 (+)
G268998 NA non-coding downstream 14282 50391372 ~ 50391699 (+)
G269003 NA non-coding downstream 22174 50399264 ~ 50399504 (+)
G269006 NA non-coding downstream 27337 50404427 ~ 50404724 (+)
G267529 NA other upstream 482665 49836617 ~ 49855502 (+)
G267381 NA other upstream 782329 49554498 ~ 49555838 (+)
G267358 NA other upstream 825692 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3505923 46801058 ~ 46832288 (+)
G269291 rap2a other downstream 521499 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1196890 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2789862 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2844337 53174264 ~ 53235027 (+)

Expression


Co-expression Network