LOC110520136


Basic Information

Item Value
gene id LOC110520136
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50334300 ~ 50336340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472946.2
AATTATAAGCAGCGTTTGAAACGTCTTGTAATGTGGTGGTCTTTAAAACCACGCTCTCTGACACGTATATGTAAAGAGCCTCACGATACCTCTAGCTATGCCTTACCTATACAGTGCAGCCCACTGTCCCACTATCTGAATTCAAATGACACTATATGGATTTTTCTCTCAAGCGCGCCCACGAATACGCGTTCACGTTTGGCAGCTCCACGTCGACATTCTTCCAGCTGTGCACAGGGCTGAAAGAAGAAGAGGTAAAAGCGGCGTGAAGCCAGCTATACGAACACTGTATGTAGGCTCCAACGAGGGACGTCAACCGCGAAATGGAGAAGAGGAAAATCTCCTGTTTTTTTACAGTTAGTCCTGCAACAATTGTATATAGcccactgtttttttttgttgcattttatGATCTTTTTGCCCTCGTGCTGGATTGCAGCTGGCCCCCTTTAACAGCTCTCACTTCTGCCAGGTGAAGGAGTGGTGAAATGGGTTGGCACAAAGGAATAGCCTACGATGTGGCACTCTGGCTTTCCAAGTAAAGTTCTGTGATACACTTCGACTCTAATTGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGTTAAAGCTCCGGCCTGCGGGAAACAAACCTACCATCTGGAGAGTGGAACCATTATTTCACATGCCACTTGCAGACTGCAAAAGGGAGAATAAAGTTTTTATTTTGACAATGA
>TU305602
GGCGTGAAGCCAGCTATACGAACACTGTATGTAGGCTCCAACGAGGGACGTCAACCGCGAAATGGAGAAGAGGAAAATCTCCTGTTTTTTTACAGTTAGTCCTGCAACAATTGTATATAGcccactgtttttttttgttgcattttatGATCTTTTTGCCCTCGTGCTGGATTGCAGCTGGCCCCCTTTAACAGCTCTCACTTCTGCCAGGTGAAGGAGTGGTGAAATGGGTTGGCACAAAGGAATAGCCTACGATGTGGCACTCTGGCTTTCCAAGTAAAGTTCTGTGATACACTTCGACTCTAATTGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGTTAAAGCTCCGGCCTGCGGGAAACAAACCTACCATCTGGAGAGTGGAACCATTATTTCACATGCCACTTGCAGACTGCAAAAGGGAGAATAAAGTTTTTATTTTGACAATGACTCATGAGTTTTCACCAACTTTTGTAGTATGTATCTGCTTATAAGTAAACACGCACTTGGTCTATTGCTATCAGAGTGAAATGTCTGAACTATTCATGAAAAATGGACTCCCAGAAAGCCATGGTAGAGTGTTACATAATTTCCTATAGGACGATGTGGAGACTCCAGTCATACCTCACTATCACTTGGTCATGTGACTCAATGGACATGAGAAGGAAAGATAAACAACAGCAGTTGAAATGTTCAAACCTCATTTTCACTGTCCTGGGTCATACAATGTAGTGGTCAAACATCTCATAACCATATCAAACCCATAAACATGAATGTCCCAATTCAGATACtttttttcttcatcattttCTGTTGAGTATTGACATTGCGTCATGCGAATGCTGGATAATTGTCTGTTGAATCATTCATTGTTGGAATGTA
>TU305607
TGTTTTTTTACAGTTAGTCCTGCAACAATTGTATATAGcccactgtttttttttgttgcattttatGATCTTTTTGCCCTCGTGCTGGATTGCAGCTGGCCCCCTTTAACAGCTCTCACTTCTGCCAGGTGAAGGAGTGGTGAAATGGGTTGGCACAAAGGAATAGCCTACGATGTGGCACTCTGGCTTTCCAAGTAAAGTTCTGTGATACACTTCGACTCTAATTGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGTTAAAGCTCCGGCCTGCGGGAAACAAACCTACCATCTGGAGAGTGGAACCATTATTTCACATGCCACTTGCAGACTGCAAAAGGGAGAATAAAGTTTTTATTTTGACAATGACTCATGAGTTTTCACCAACTTTTGTAGTATGTATCTGCTTATAAGTAAACACGCACTTGGTCTATTGCTATCAGAGTGAAATGTCTGAACTATTCATGAAAAATGGACTCCCAGAAAGCCATGGTAGAGTGTTACATAATTTCCTATAGGACGATGTGGAGACTCCAGTCATACCTCACTATCACTTGGTCATGTGACTCAATGGACATGAGAAGGAAAGATAAACAACAGCAGTTGAAATGTTCAAACCTCATTTTCACTGTCCTGGGTCATACAATGTAGTGGTCAAACATCTCATAACCATATCAAACCCATAAACATGAATGTCCCAATTCAGATACtttttttcttcatcattttCTGTTGAGTATTGACATTGCGTCATGCGAATGCTGGATAATTGTCTGTTGAATCATTCATTGTTGGAATGTA
>TU305604
GGATTGCAGCTGGCCCCCTTTAACAGCTCTCACTTCTGCCAGGTGAAGGAGTGGTGAAATGGGTTGGCACAAAGGAATAGCCTACGATGTGGCACTCTGGCTTTCCAAGTAAAGTTCTGTGATACACTTCGACTCTAATTGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGTTAAAGCTCCGGCCTGCGGGAAACAAACCTACCATCTGGAGAGTGGAACCATTATTTCACATGCCACTTGCAGACTGCAAAAGGGAGAATAAAGTTTTTATTTTGACAATGACTCATGAGTTTTCACCAACTTTTGTAGTATGTATCTGCTTATAAGTAAACACGCACTTGGTCTATTGCTATCAGAGTGAAATGTCTGAACTATTCATGAAAAATGGACTCCCAGAAAGCCATGGTAGAGTGTTACATAATTTCCTATAGGACGATGTGGAGACTCCAGTCATACCTCACTATCACTTGGTCATGTGACTCAATGGACATGAGAAGGAAAGATAAACAACAGCAGTTGAAATGTTCAAACCTCATTTTCACTGTCCTGGGTCATACAATGTAGTGGTCAAACATCTCATAACCATATCAAACCCATAAACATGAATGTCCCAATTCAGATACtttttttcttcatcattttCTGTTGAGTATTGACATTGCGTCATGCGAATGCTGGATAATTGTCTGTTGAATCATTCATTGTTGGAATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472946.2 False 720 mRNA 0.45 2 50334300 50335908
TU305602 False 890 lncRNA 0.41 2 50334562 50336340
TU305607 False 808 lncRNA 0.40 2 50334644 50336340
TU305604 True 722 lncRNA 0.40 2 50334730 50336340

Neighbor

gene id symbol gene type direction distance location
LOC110520134 ro32 coding upstream 13006 50316070 ~ 50321294 (+)
LOC110505268 hoxd1aa coding upstream 145606 50187165 ~ 50188694 (+)
hoxd3a hoxd3 coding upstream 149973 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding upstream 161903 50169601 ~ 50172397 (+)
hoxd9a hoxd9aa coding upstream 175452 50155835 ~ 50158848 (+)
agps LOC106586249 coding downstream 2259 50338167 ~ 50377090 (+)
osbpl6 LOC106586252 coding downstream 119131 50455039 ~ 50519865 (+)
gpr1 LOC106586257 coding downstream 253050 50588958 ~ 50592305 (+)
LOC110520148 LOC106586260 coding downstream 259708 50595616 ~ 50601655 (+)
LOC110520146 ino80d coding downstream 266075 50601983 ~ 50618761 (+)
G268941 NA non-coding upstream 9342 50324683 ~ 50324958 (+)
G268936 NA non-coding upstream 9719 50323282 ~ 50324581 (+)
G268939 NA non-coding upstream 11154 50322769 ~ 50323146 (+)
G268938 NA non-coding upstream 11758 50321487 ~ 50322542 (+)
G268970 NA non-coding upstream 21569 50312512 ~ 50312731 (+)
G268987 NA non-coding downstream 34043 50369951 ~ 50370275 (+)
G268994 NA non-coding downstream 51262 50387170 ~ 50387393 (+)
G268997 NA non-coding downstream 54038 50389946 ~ 50390157 (+)
G268998 NA non-coding downstream 55464 50391372 ~ 50391699 (+)
G269003 NA non-coding downstream 63356 50399264 ~ 50399504 (+)
G267529 NA other upstream 478798 49836617 ~ 49855502 (+)
G267381 NA other upstream 778462 49554498 ~ 49555838 (+)
G267358 NA other upstream 821825 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3502056 46801058 ~ 46832288 (+)
G269291 rap2a other downstream 562681 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1238072 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2831044 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2885519 53174264 ~ 53235027 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G87972 NA unknown CI01000015 null 1876004 ~ 1876594 (+)
grasscarp (Ctenopharyngodon idella) G512413 NA non-coding CI01000353 null 589205 ~ 589459 (-)