LOC110520134 (ro32)


Basic Information

Item Value
gene id LOC110520134
gene name ro32
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50316070 ~ 50321294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597221.2
GCCTATCCGGTTCATCATGGTAAAACCGATCCTGGATCAGTTAACGACTGCACGACCAGTTTAGACTTCCTATCACGTGGTGCAGTAGCTTCCTTTCTTCTCAGAACCAAGGAAAGAGAATACTTCGCAAAATGGAGGGTCATGAACATAGGGAGCCTGAACAGCTCAGGAAGCTGTTCATTGGGGGCCTAAGTTTTGAAACCACTGAGGAAAGTTTAAGGATCCATTTTGAACAATGGGGAAACCTGACAGACAGTGTGGTAATGCGGGACCCAAACAACAAGCGCTCGAGAGGGTTCGGCTTTGTAACATACTCCTGTGTGGAGGAGGTGGATGCCTGCATGGCAGCTCGCCCTCATAAGGTGGACGGACGTGTTGTTGAACCTAAAAGGGCTGTATCGAGAGAGGACTCTAACAGACCGGGTGCCCACCTGACGGTGAAGAAGATATTTGTTGGGGGGATCAAGGAGGACACACGGGAGGACCATATCAGGGAGTACTTTGAGACCTACGGGAGGATCGAGACCATTGACATTATGGAGGAACGCGCAACTGGGAAAAAGAGGGGATTCTGCTTTGTCTCATTTGATGACAATGACACTGTGGATAAAATTGTTGCTCAGAAATACCATACAATAAACAGCCACAACTGCGAAGTCAGAAAAGCACTCCCAAAACAGGAAATGGAGGCGTCCAATCAGAGGAATAGGGGTGGTGGCTCTGGAAACTTCATGGGCCGAGGTGGTAACTCTGGTGGTGGCAACTTTGGGCAAGGAGGCTACGGTGGcggaagaggaggggatggataCAATGGATACGGTGGAGAGGGTGGAAACTACAGTGGGGGACCTGGCTACAGAGGTGGACGTGGTGGCGGGTATGGGGGAGGAAGTCCTGGGTATGGTAACCAGGGAGGAGGCTTTGGAGGAGGATATGATAACTACAACGACAGAGGCAACTTTAGAGGGAACTTTGGTGGTGGAAGGGGCGGAAATTACAATGACTTTGGCAACTACGGAGGACCACAATCTAGCTATGGTCCCATGAAGGGGAACAACTTTGGTGGTAGAAACTCTGGTGGTGGCCCCTATGGAGGTGGCTACGGCTCAGGCGGTGGAAGTGGGCATGGCTACGGCTCACAGCGATATTGATACTATGACGCTCGGGCTTCAGTTCTTAGCAGGAGAGGAGATGAGCAAGGATTTGTCAGGAAAGCTGCAGGTTACTGTACTTTTAGGCAGTCGTCTGAAAGCATGTAGAGGAACAGAAGTCAGAAAGTTATTGCAGCTTTAACGGGAAACTAATCCTAAGAAAGACTGTACACACAAACTACAAAGTGCAAGGGTGTAGCTAGTACCTTATTTGTGGTAGATGTTCCCCCACTTTATAATTGTTCCTTTTGTGCATCTGAAGTGTATGTATTGTTGTGCCTGTGGAATCAGGAGttttaacaaaaataaaaaagtatttcgAACTCCAGTCAGTTTTGAATAGTCCTACATTTATTTTGCTGTAGATTGATAGATTTTCTATGGTCTTCTCATCTTTGTCGTTTTTGAAGAACTTGGTCCTGTCAGAAGGGCCTATACGCATCAGGCCCTCAAATAAGCTAGTGctgtcttttttttcttttgaAGTTAATATGATTGCAAGTCTTTGTATCAAGTGTATTATGATCTGTATTTCAAGAACCCCATGTATTTTATTAGTGACAAGTGGTTATAAGTAGTGCAGACAACAATTTTAAGGAAATGTGTTTTACACTACTTGTATGCAGTAAACAGAATTCTagattgtaaaaaatattttgacaaGTGGAAAAAAGTTTAATAAAGTTGTGTAGTAAAGTC
>XM_021597222.2
GCCTATCCGGTTCATCATGGTAAAACCGATCCTGGATCAGTTAACGACTGCACGACCAGTTTAGACTTCCTATCACGTGGTGCAGTAGCTTCCTTTCTTCTCAGAACCAAGGAAAGAGAATACTTCGCAAAATGGAGGGTCATGAACATAGGGAGCCTGAACAGCTCAGGAAGCTGTTCATTGGGGGCCTAAGTTTTGAAACCACTGAGGAAAGTTTAAGGATCCATTTTGAACAATGGGGAAACCTGACAGACAGTGTGGTAATGCGGGACCCAAACAACAAGCGCTCGAGAGGGTTCGGCTTTGTAACATACTCCTGTGTGGAGGAGGTGGATGCCTGCATGGCAGCTCGCCCTCATAAGGTGGACGGACGTGTTGTTGAACCTAAAAGGGCTGTATCGAGAGAGGACTCTAACAGACCGGGTGCCCACCTGACGGTGAAGAAGATATTTGTTGGGGGGATCAAGGAGGACACACGGGAGGACCATATCAGGGAGTACTTTGAGACCTACGGGAGGATCGAGACCATTGACATTATGGAGGAACGCGCAACTGGGAAAAAGAGGGGATTCTGCTTTGTCTCATTTGATGACAATGACACTGTGGATAAAATTGTTGCTCAGAAATACCATACAATAAACAGCCACAACTGCGAAGTCAGAAAAGCACTCCCAAAACAGGAAATGGAGGCGTCCAATCAGAGGAATAGGGGTGGTGGCTCTGGAAACTTCATGGGCCGAGGTGGTAACTCTGGTGGTGGCAACTTTGGGCAAGGAGGCTACGGTGGcggaagaggaggggatggataCAATGGATACGGTGGAGAGGGTGGAAACTACAGTGGGGGACCTGGCTACAGAGGTGGACGTGGTGGCGGGTATGGGGGAGGAAGTCCTGGGTATGGTAACCAGGGAGGAGGCTTTGGAGGAGGATATGATAACTACAACGACAGAGGCAACTTTAGAGGGAACTTTGGTGGTGGAAGGGGCGGAAATTACAATGACTTTGGCAACTACGGAGGACCACAATCTAGCTATGGTCCCATGAAGGGGAACAACTTTGGTGGTAGAAACTCTGGTGGTGGCCCCTATGGAGGTGGCTACGGCTCAGGCGGTGGAAGTGGGCATGGCTACGGCTCACAGCGATATTGATACTATGACGCTCGGATCGTGAAAGAAGCATTACGACTACTCTTAAAGGCTGAAAATCTAATGACACGATTACATGGACATTTCTGGATGGGTAAGACTTAAGTAAATCTCAAAGTATACTGCAAGTTGTAAGACTGCACACACCAACATTCAAATAGGGGTGAACAATTGCTGTTGAATATGGAATCCCTTCTAAGTAAAATGGTAGCATTCACTACATTTTTGGTCATTTTTAAGAATCTCATGCATTTCTTGCACAGCTCACTGATCTCTGGGAGTCTGCAGAACAGACTTTACATTCACGCAGGCTTACACTACAGGTATCTTGATATTTTGCTCTGCATCATTTTAAAGATTTTCTATACATCGCTTTGAAAGGTAACATTTAACAAGTGTAACTTAATTAAGGATGATGATTTTTTTCAACCCCTGGTCAGACAAGGTAGGTATCATATATTCTAGTTTTAATAAATTAATCCAAGTATGCATGTCTATTAGATGTGTTTCTTGGATAAAGACATCTCTCCTAA

Function

NR:

description
heterogeneous nuclear ribonucleoprotein A3-like

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597221.2 False 1850 mRNA 0.45 11 50316070 50320201
XM_021597222.2 True 1681 mRNA 0.46 11 50316070 50321294

Neighbor

gene id symbol gene type direction distance location
LOC110505268 hoxd1aa coding upstream 127376 50187165 ~ 50188694 (+)
hoxd3a hoxd3 coding upstream 131743 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding upstream 143673 50169601 ~ 50172397 (+)
hoxd9a hoxd9aa coding upstream 157222 50155835 ~ 50158848 (+)
hoxd10a hoxd10 coding upstream 162843 50146811 ~ 50153227 (+)
LOC110520136 NA coding downstream 13006 50334300 ~ 50336340 (+)
agps LOC106586249 coding downstream 16873 50338167 ~ 50377090 (+)
osbpl6 LOC106586252 coding downstream 133745 50455039 ~ 50519865 (+)
gpr1 LOC106586257 coding downstream 267664 50588958 ~ 50592305 (+)
LOC110520148 LOC106586260 coding downstream 274322 50595616 ~ 50601655 (+)
G268970 NA non-coding upstream 3339 50312512 ~ 50312731 (+)
G268956 NA non-coding upstream 23177 50292685 ~ 50292893 (+)
G268877 NA non-coding upstream 83380 50232471 ~ 50232690 (+)
hoxd12a hoxd12 non-coding upstream 175156 50139213 ~ 50141004 (+)
G268714 NA non-coding upstream 213014 50102779 ~ 50103056 (+)
G268938 NA non-coding downstream 193 50321487 ~ 50322542 (+)
G268939 NA non-coding downstream 1475 50322769 ~ 50323146 (+)
G268936 NA non-coding downstream 1988 50323282 ~ 50324581 (+)
G268941 NA non-coding downstream 3389 50324683 ~ 50324958 (+)
G267529 NA other upstream 460568 49836617 ~ 49855502 (+)
G267381 NA other upstream 760232 49554498 ~ 49555838 (+)
G267358 NA other upstream 803595 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3483826 46801058 ~ 46832288 (+)
LOC110520146 ino80d other downstream 281008 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 577295 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1252686 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2845658 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2900133 53174264 ~ 53235027 (+)

Expression


Co-expression Network