LOC110505268 (hoxd1aa)


Basic Information

Item Value
gene id LOC110505268
gene name hoxd1aa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50187165 ~ 50188694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584398.2
TGGGCCAGGAAGTACAGTAGGCTAACTAATGAGGACAAGGGGCGCTGGAAATCATTAACCTCTGGTGGATTTACAACGCCGATTTACAAGGGCCAACATGAGCTCGTATTTAGACTTCTACTCGGAAGGCGACATGATGCCATTGCCTGTGAAATTCTGTCACGACGAACACAAACCAGGGACACTTCAGTACCACGGGGAGATAGTTGGGAGACTTTCGTCAGGTATGCTGGACCACCAGAGCAGCAGTCGGTCGATATCAGGAGGAGTGCATCATCAAGGTGTGTTTAAGGTGCCACGCGATAGCGACGCATCTGTATCTGATGGCAATTACGTGGATCAGGGACTTGCTTATAATTTGGCATATGGATGCTACAACGACGTGGAACAGAACAGGGTGCATACCCAGTGCGTGAACTCGGCATATTCAGGAAACGGTCCTTTCCCCAGCCATCCCACAGAGACGTACTACCACGATATTAGAGAAACAAACCAGCAGTGGCAGAGCATAAAGATATCGCGAGGATTCGTCAATGCCAGTCATCAGAATGCATCACCATCCCATGATAATTATCCAAGAACTGGTCCTAGGCAAGAGGAGCCGCAAGTTTTGGCAAATACATTTGACTGGATGAAAATCAAAAGAAGCAACCCCAAAATCAGTAAAGCTATTGAATATGGATTATCGAACGCCGGATCAATTCCAAGAACAAATTTCACAACCAAGCAGTTAACAGAATTAGAAAAAGAATTTCATTTCAACAAGTATCTCACCAGGTCAAGAAGGGTTGAGATAGCCCATAGTTTGCACCTGAATGAAACCCAGGTGAAAATATGGTTTCAAAACAGAAGAATGAaacaaaagaagagagagaaagaaggccTTACTGGGATGTGCGTGCCTCCCATATCGAAGAACTCGGACTCGTCCCCATCATCAGAACTCAACTCTCCAGTTtcatcccctccctgctcccccatCACGCTCTCCCACAGCGGATAACTGGAGGGGTTGAGCACATCATTGTGGTTTACTCAGATTTCTGTTGTCACCTTAGGCTTTTCTTATCTGTTGTAAATAAGATACACCCACTAATTGCACTAATGTCTTTTATGATATTAAGAATTAACACGGTGCCTTTTGTTAAGTTATCTGACTGAGGGAAAGTTCCAACATGTTGTGAATGAAATTGTTTGTGAAGTTTCAATCAAGGGCCACTGTTGTGTCTTGAACTATAATTGCCTTACTTATTGATGACTGATCGAAGCGTTACACTGAATTAACCAAATATTAAACCAAATGCCTTATTATGTAAAGATTAGGTTTATAAAATCAAGTGTGAATCAGACATTTGCAGGGGCAAGCCCCGAAGTGTTAGAAGTGATGCAATGCAATTGTTAATAAAATGTCAATTAAGTTTACATCA

Function

NR:

description
homeobox protein Hox-D1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09301 HOX_1; homeobox protein HoxA/B/D1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584398.2 True 1427 mRNA 0.43 2 50187165 50188694

Neighbor

gene id symbol gene type direction distance location
hoxd3a hoxd3 coding upstream 2838 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding upstream 14768 50169601 ~ 50172397 (+)
hoxd9a hoxd9aa coding upstream 28317 50155835 ~ 50158848 (+)
hoxd10a hoxd10 coding upstream 33938 50146811 ~ 50153227 (+)
hoxd11a hoxd11aa coding upstream 40673 50144655 ~ 50146492 (+)
LOC110520134 ro32 coding downstream 127376 50316070 ~ 50321294 (+)
LOC110520136 NA coding downstream 145606 50334300 ~ 50336340 (+)
agps LOC106586249 coding downstream 149473 50338167 ~ 50377090 (+)
osbpl6 LOC106586252 coding downstream 266345 50455039 ~ 50519865 (+)
gpr1 LOC106586257 coding downstream 400264 50588958 ~ 50592305 (+)
hoxd12a hoxd12 non-coding upstream 46251 50139213 ~ 50141004 (+)
G268714 NA non-coding upstream 84109 50102779 ~ 50103056 (+)
G268604 NA non-coding upstream 102008 50084110 ~ 50085157 (+)
G268620 NA non-coding upstream 143622 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 151142 50035823 ~ 50036023 (+)
G268877 NA non-coding downstream 43777 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 103991 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 123818 50312512 ~ 50312731 (+)
G268938 NA non-coding downstream 132793 50321487 ~ 50322542 (+)
G268939 NA non-coding downstream 134075 50322769 ~ 50323146 (+)
G267529 NA other upstream 331663 49836617 ~ 49855502 (+)
G267381 NA other upstream 631327 49554498 ~ 49555838 (+)
G267358 NA other upstream 674690 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3354921 46801058 ~ 46832288 (+)
LOC110520146 ino80d other downstream 413608 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 709895 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1385286 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2978258 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 3032733 53174264 ~ 53235027 (+)

Expression


Co-expression Network