RNA id: XM_036974477.1


Basic Information

Item Value
RNA id XM_036974477.1
length 4074
RNA type mRNA
GC content 0.46
exon number 20
gene id agps
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50338167 ~ 50377090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTACCGTCGTCTTCGTTAGGCTTACCGCTCGAACACACACATTCTATCCCTATGCTGACCTCTGACAGCTGCCTCTCCCTGCACAAACACGGAAGCAGCATGGCGTCAGACAGCAACAGCTCCGAGAGCCAACGAATTGCACAGCAAAGATTGAGGATAATTGCCGGGCATTTACAGAAACATAAGGACGACGACTCGGGAACTATCGCAACTGAATGCAAAGCTGAAGCGAATAAAGGGACGGTGCCGAGAAAGAGGCAGGAGATTATGAAGTGGAATGGCTGGGGGTACAGTGACTCCAAATTCCTATTCAATAAGAAGGGTCAAGCAGAATTCACAGGCAAAAGGTATAGGCTAAGTGGGATGGTCCTGCCCAGTTTGCAGGACTGGTTTGAAAACACCTTTGGCGCCAGTGTGAACCATAAAAGCCCCGCGACACCCGCCCTGAATGCCAGCGCTGTTCCACCGGCCAGTCTGAACGAGGCGTTCGTTGAGGACCTGAAGGCCACGGGCATCCCCTTCTCCCATGAGGCCGAGGACAGGGTGTTCCGTGCCCACGGTCATTGCTTACATGAAATCTTTGCTCTCAGAGAAGGGAAGAAATTTGAGCGGGTTCCGGACATGGTGGTGTGGCCAAACTGCCACAGCGACGTGGTGAAAATTGTGGAGCTGGCATGCAAGCACAATGTTTGTTTGATACCGTACGGCGGAGGGACCAGTGTGACCAGTGCTCTAGAGTGCCCCCCGGAGGAGACTCGCTGCATCGTCTCTCTGGATACTTCACAGATGAACCGCATTTTGTGGATCGACGAGAAGAATTTAGTCGCCCACGTTGAAGCTGGCATCATCGGTCAGGATCTGGAGAGATTACTCAACGAGAGCGGCTACTGCACGGGGCATGAGCCCGACTCCATGGAGTTCAGTTCCCTAGGAGGCTGGGTGGCCACGAGGGCATCGGGCATGAAGAAGAACGTATACGGCAACATCGAGGACCTGGTGATCCACATAAAGGTGGTGACCCCTCGAGGGGTGATAGAGAAGAGCTGCCAGGGGCCACGCATGTCCACTGGGCCAGACATCCACCACTTCATCCTGGGCTCAGAAGGAACTCTTGGTGTGGTTACCGAGGTAACGATGAAGATCCGGCCAATCCCCGAGTACCAGAAGTACGGCTCGGTGGTCTTCCCAAACTTTGAGGCGGGAGTGGCCTGCTTACGAGAGGTAGCCAAGCAGaggtGTGCACCTGCATCCATCCGGCTCATGGATAACGAACAGTTTCAGTTTGGTCATGCCCTGAAACCTCAAGTGTCGTCCATTTTCACAAATTTTGTGGAAGGGTTAAAGAAATTCTACATCACCAAGTTCAAAGGTTTCGACCCCCACCAGTTGGTTGTTGCCACCCTGCTGTTCGAAGGGGACCGCGAGAGGGTCTTGCAGCACGAAAAACAAGTTTACGACATTGCTGCAACATTTGGGGGCCTGGCAGCTGGAGAGGACAATGGACAGAGAGGCTACATTCTGACCTTCGTCATCGCTTACCTCCGGGACTTGGGGATGGACTACTACGTGGTCGCAGAATCATTTGAGACATCGGTGCCTTGGGACAGGGTGTTGGACCTTTGCCGGAATGTCAAAGAGCGTATTAACCGAGAGTGTAAAGAGCGAGGGGTCCAGTTTCAACCCTTGACCTCATGCAGAGTGACTCAGACCTATGACGCTGGCGCGTGTGTTTACTTCTACTTTGCCTTCAACTACAGAGGACTGGCGGACCCAGTACATACATATGAACGAGTGGAGCACGCCGCTAGAGAGGAGATCCTAGCCAATGGAGGAAGCCTCTCGCACCACCACGGAGttgggAAACTTCGGAAGGAGTGGATGAAGGAGAGCATCTCCAGCTTGGGTGTCGGGATGCTCCAGTCCGTCAAGGATTATGTGGACCCAGATAACATTTTCGGCAACCGAAACCTCCTCTAATTTACTCCTTGCTTTGTTTTCCACCTTTTTATCTTCACACCTTTTCTCACAGCCTCTCGTGCAACTGGCTTTAACAGTTACTAAAATGTGAAATTGACACGAAAAGAAATATAAacgtcccccccccccgcctccttCTGTATGACTTGAGTTGCGCTGTCATCGTCAGACGTGGTTCCATTCCTAGGGTGCGTGTCTGTCTGGTTCTTGAGGAAAGCAATAAGCCGGTCACCTTTCACTTTCCTCGCGCTACATTCTGTTGCAGGCGGGTAACAATAATCGTCTACGATTCATTTTTGACGATCATTGTTTCAAAAGGCCTCGGCCCTTTCCAGAGTGTATCATACTAACTACAGCACGGTGATTGTGTACTGTTGCTCGTTTCAGTCACGTGTACAGCACGCTATAGGAATGGCCTTTCAATACCGTACATGATGCGAGCTAACTTTTGTGATCCCATGTTTCCCATTTATTAATTCATGAATTGTTTCCTACGACTGATGCCATCTTCACTAACTTAATTAGTATTTGTACACGTTGTTTATTCACCTGTGTTTGGCACTACTTTAGCGGTAAGTCTGAGATGAACGCACTCTCTAAATCCCTGTGCCTTTCTGAAGacgtctccctttcctcctcatATACTCCAGGTGCAAAGGTTACCGACTGGAAGCTTGACtggtttgtctttttttttttttttatggcatCCTGTTTCTTCCCTAATAATGACCATGCCCTTCATTCGAGATTTCTCTGTTTCCAATTGGTCTTTGTTTCTCAACTCAAGCCCTCATGCCTTTTTAGTTATGACTTAGAACGATGAATTATTGCCACAAGAGCTGTGTATTTTGTTTGGATCTAAACATGTACCTACCTAGGAGTACTTACATTATGCTTGAGTGGTGCCTACTGAAAATTGACCTCAGGGTTCAAACGTCCCGACCCTAAAACCTTAGCTATTACGTTAAACTGTCATATTGAAGAAACTATGACAAGGTTAGATGACGCATCTACCAACtcatattattattgtttttgtattttctgAACTAGATTTTAACCTTGCATGGTCTTTGCTTGTCATATAGAGTTCAGTTTGTGGACAAAGCCAATATACTTGGATCGTACATGCTTTAGTGTGTACTTTAGTGttaacaggttacagacaacTGAATCCCAATGCCCATGTTTGTACCAAAGACTTTTCACACAACCCTTTCACCATGCAAACATACTGGATGTATATGTTTGTACATGTTGTATAGTTAAATACATTTAGTATTACATTAACATTTATATATCCTGATACTTTTTTTATTATTCATATATGCAAGTACCCAGAAACCATCTCTAGAAATATCCAAAAATGTATAACTGTTACTGTAAGTATTACATGTACAGTACTTATTCCTGTTCATATCAGACAAAACTTCATTAAAATGTAATTACAATTGTCACTACTTCAAAATAAGTTGCTTGTATTTGGATGTATTTACACACAAATACATCAGAATTCATCGCTAGTCTGCTGAGTGTCCCAGTATTATGGTTTTGTTTGAAAGGATACATTTGAGTCAAACAAAGTTGTACCTTTGTCACTTAACGATGATTGTGTAGCTAAGTTTGGCCTCTCTTTTGGAGGCATGTGTTGATGTTGTGGCCAATCCTGATCTCGCAGACATGGAATCTACTGTGCGCGGTGCTAGAGAAAGATACATGAAATGTTGTTGCGACCATTTTCCTGTCACTACTACTGTATGACTTTGTTCCTCCTGTTCCCAAGCTAGCCTCACAGCTTTCCCACAGTGCATTGTGTCACCCTATGCCACCTTCCTGCCCAAGTTTCTCATCTCCAGCTCCAATAAACGTTTTGCCTCAATGAAACGTCAATGAAGGAAATGGTGGGGGCCCAGACAGTATTTTCTGATCAGTTTCATGCTTTTACGTCTTGTGATGGTATCGAAAGAGAACTTAACGAGAGCTTGAAATTTGAATGTTTGTTATTTTCCACTTGATAGTATTAACATTCAAGTACATTTTGTTAATGCTGTTTTGTGCAAtaaatttaaataaaaacaaGCGGTTGTTGTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0008609 alkylglycerone-phosphate synthase activity molecular_function

KEGG:

id description
K00803 AGPS, agpS; alkyldihydroxyacetonephosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305602 lncRNA upstream 1829 50334562 ~ 50336340 (+) False LOC110520136
TU305607 lncRNA upstream 1829 50334644 ~ 50336340 (+) False LOC110520136
TU305604 lncRNA upstream 1829 50334730 ~ 50336340 (+) True LOC110520136
TU305568 lncRNA upstream 13211 50324683 ~ 50324958 (+) True G268941
TU305563 lncRNA upstream 13588 50323282 ~ 50324581 (+) True G268936
TU305629 lncRNA downstream 10080 50387170 ~ 50387393 (+) True G268994
TU305632 lncRNA downstream 12856 50389946 ~ 50390157 (+) True G268997
TU305633 lncRNA downstream 14282 50391372 ~ 50391699 (+) True G268998
TU305638 lncRNA downstream 22174 50399264 ~ 50399504 (+) True G269003
TU305641 lncRNA downstream 27337 50404427 ~ 50404724 (+) True G269006
XR_002472946.2 mRNA upstream 2261 50334300 ~ 50335908 (+) False LOC110520136
XM_021597222.2 mRNA upstream 16875 50316070 ~ 50321294 (+) True LOC110520134
XM_021597221.2 mRNA upstream 17968 50316070 ~ 50320201 (+) False LOC110520134
XM_021584398.2 mRNA upstream 149475 50187165 ~ 50188694 (+) True LOC110505268
XM_021597217.2 mRNA upstream 153842 50177010 ~ 50184327 (+) False hoxd3a
XM_021597229.2 mRNA downstream 77949 50455039 ~ 50519865 (+) False osbpl6
XM_021597234.2 mRNA downstream 77949 50455039 ~ 50519865 (+) False osbpl6
XM_021597235.2 mRNA downstream 77949 50455039 ~ 50519865 (+) False osbpl6
XM_036974479.1 mRNA downstream 77949 50455039 ~ 50519865 (+) False osbpl6
XM_036974481.1 mRNA downstream 77949 50455039 ~ 50519865 (+) False osbpl6
TU305367 other upstream 155143 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 482667 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 782331 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 825694 49510803 ~ 49512475 (+) True G267358
TU300305 other upstream 3505965 46831008 ~ 46832204 (+) True LOC110520046
TU305730 other downstream 225212 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 521499 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1196890 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2789862 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2844337 53221427 ~ 53223265 (+) True LOC110520187

Expression Profile