LOC110520157 (LOC106586094)


Basic Information

Item Value
gene id LOC110520157
gene name LOC106586094
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50958014 ~ 50959445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597281.2
CACTAATACTGATTCATGTGGGCTTAGTTAGAGTAGATCTTTGATACCTCTAAAGCTGCAAGGACACCTAATGCATCTTGCTGAAGAACTAATGGGCGCGCTACACATTCTTTGGGGGAGGGCTCTGGGATGCTGTTCAAACTGACTGCTGCCTGAAGAATCAGGAAATTCAGAAGTGACACACAGATACTGGAGCAGCATTGCAGCTAATAGACATTTTGTTGGctcacacaacacaaccatggctAGCGAAGACAGGGATAATAAGACTCCTGAATGTTTTCCAGTGGATGACTACATAAAGAGATCCTACCTTCCGATCATGTATGGGATCATATTTGTAGTTGGGCTTGTGGGTAACATCACTTCAATCATCATCTACGTGGTCAGGCTGCGCCCATGGAAGAGCAGCAGCATCATCATGGTGAACCTTGCCTTGGCAGACCTCCTGTATGTTCTGTGTCTGCCCTTCCTGGTCCACTACTACATCCACGATGACTGGATCATGGGCGAGGCCATGTGTCGCATTGTTCGCTTTAGCTTCCACTTCAACCTGTACGGCAGCATCCTCTTCCTCACCTGCCTGAGTGTGTTCCGCTATGTGGTCGTGGTCCACCCACTGAGGGCAGCCCAGGTGCAGAGGACGAGCTGGGGTGTGATCgcctgcctggctgtgtggttcaTATCTGTGTTGGAGATTATACCCATGGTCCACATGATCACTGTGAAGAAGACTGAGAACAATATGACGTCATGCCTGGATTTTGCTAGTAATGATCCAGAAGAGGTGTGGGTCTATGGCTGGCTACTTACTGTCCTGGGCTACCTACTCCCCCTAGTGGTGGTGTGCCTGAGTTACATCCGTGTTGCATGTGAGCTGGCCGGCGGGCCACATGAGGGCCGTCCGAACAGGGTGCGTGCCCGCAGGATGACTGTGCTGATCCTGGTTGTGTTTGTGCTATGCTTCACACCCTTCCACATCCTCCGTGCCCTGCGGGTGTACACCCAGATGGAAGCCCAAAGGCCAGTGCCCTGTATGCTGCTGATAGGGGTCAATGCAGCCTACACCATCTCCAGACCCCTGGCAGGGCTCAACACCTTCTTCAACCTGGCTCTGTACACTCTGGCTGGAGACAGGTTCCACCAGGCGGTCCTTGGCCTCTTCCGCTGGAGACCCCAGTTTCTCAAGACCAAGAGGCCCATCATGGTGGCAGTGATCGGCCAACCAGGCAGAAACAGTATGTCACAGGCTAACGTGCTAAAGAGCTGAGTCAAAATACTACACAACATTTTATATACATATGGTTGATTTACTTCATTTCAA

Function

NR:

description
2-oxoglutarate receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597281.2 True 1324 mRNA 0.51 2 50958014 50959445

Neighbor

gene id symbol gene type direction distance location
LOC110520146 ino80d coding upstream 339253 50601983 ~ 50618761 (+)
LOC110520148 LOC106586260 coding upstream 356359 50595616 ~ 50601655 (+)
gpr1 LOC106586257 coding upstream 365709 50588958 ~ 50592305 (+)
osbpl6 LOC106586252 coding upstream 438149 50455039 ~ 50519865 (+)
agps LOC106586249 coding upstream 580924 50338167 ~ 50377090 (+)
uggt2 LOC106586268 coding downstream 105729 51065174 ~ 51110275 (+)
LOC110520162 LOC106586269 coding downstream 189099 51148544 ~ 51199761 (+)
LOC110520163 LOC106586270 coding downstream 269040 51228485 ~ 51230831 (+)
LOC110520164 LOC100137092 coding downstream 299347 51258792 ~ 51262216 (+)
LOC110520165 LOC106586271 coding downstream 307628 51267073 ~ 51276411 (+)
G269290 NA non-coding upstream 63093 50894287 ~ 50894921 (+)
G269289 NA non-coding upstream 64642 50893136 ~ 50893372 (+)
G269279 NA non-coding upstream 82515 50875289 ~ 50875499 (+)
G269231 LOC106586263 non-coding upstream 148261 50804590 ~ 50809753 (+)
G269224 NA non-coding upstream 167959 50788800 ~ 50790055 (+)
G269334 NA non-coding downstream 53 50959498 ~ 50959805 (+)
G269336 LOC106586266 non-coding downstream 547 50959992 ~ 50964940 (+)
G269356 NA non-coding downstream 25176 50984621 ~ 50985007 (+)
G269365 NA non-coding downstream 35166 50994611 ~ 50995038 (+)
G269366 NA non-coding downstream 36642 50996087 ~ 50996330 (+)
G269291 rap2a other upstream 57737 50898589 ~ 50900277 (+)
hoxd3a hoxd3 other upstream 774988 50162278 ~ 50184327 (+)
G267529 NA other upstream 1102512 49836617 ~ 49855502 (+)
G267381 NA other upstream 1402176 49554498 ~ 49555838 (+)
LOC110520169 il1rl1 other downstream 614535 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2207507 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2261982 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 2331885 53291284 ~ 53339392 (+)
G272965 NA other downstream 2689380 53648825 ~ 53652431 (+)

Expression


Co-expression Network