RNA id: XM_021597281.2


Basic Information

Item Value
RNA id XM_021597281.2
length 1324
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC110520157
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50958014 ~ 50959445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTAATACTGATTCATGTGGGCTTAGTTAGAGTAGATCTTTGATACCTCTAAAGCTGCAAGGACACCTAATGCATCTTGCTGAAGAACTAATGGGCGCGCTACACATTCTTTGGGGGAGGGCTCTGGGATGCTGTTCAAACTGACTGCTGCCTGAAGAATCAGGAAATTCAGAAGTGACACACAGATACTGGAGCAGCATTGCAGCTAATAGACATTTTGTTGGctcacacaacacaaccatggctAGCGAAGACAGGGATAATAAGACTCCTGAATGTTTTCCAGTGGATGACTACATAAAGAGATCCTACCTTCCGATCATGTATGGGATCATATTTGTAGTTGGGCTTGTGGGTAACATCACTTCAATCATCATCTACGTGGTCAGGCTGCGCCCATGGAAGAGCAGCAGCATCATCATGGTGAACCTTGCCTTGGCAGACCTCCTGTATGTTCTGTGTCTGCCCTTCCTGGTCCACTACTACATCCACGATGACTGGATCATGGGCGAGGCCATGTGTCGCATTGTTCGCTTTAGCTTCCACTTCAACCTGTACGGCAGCATCCTCTTCCTCACCTGCCTGAGTGTGTTCCGCTATGTGGTCGTGGTCCACCCACTGAGGGCAGCCCAGGTGCAGAGGACGAGCTGGGGTGTGATCgcctgcctggctgtgtggttcaTATCTGTGTTGGAGATTATACCCATGGTCCACATGATCACTGTGAAGAAGACTGAGAACAATATGACGTCATGCCTGGATTTTGCTAGTAATGATCCAGAAGAGGTGTGGGTCTATGGCTGGCTACTTACTGTCCTGGGCTACCTACTCCCCCTAGTGGTGGTGTGCCTGAGTTACATCCGTGTTGCATGTGAGCTGGCCGGCGGGCCACATGAGGGCCGTCCGAACAGGGTGCGTGCCCGCAGGATGACTGTGCTGATCCTGGTTGTGTTTGTGCTATGCTTCACACCCTTCCACATCCTCCGTGCCCTGCGGGTGTACACCCAGATGGAAGCCCAAAGGCCAGTGCCCTGTATGCTGCTGATAGGGGTCAATGCAGCCTACACCATCTCCAGACCCCTGGCAGGGCTCAACACCTTCTTCAACCTGGCTCTGTACACTCTGGCTGGAGACAGGTTCCACCAGGCGGTCCTTGGCCTCTTCCGCTGGAGACCCCAGTTTCTCAAGACCAAGAGGCCCATCATGGTGGCAGTGATCGGCCAACCAGGCAGAAACAGTATGTCACAGGCTAACGTGCTAAAGAGCTGAGTCAAAATACTACACAACATTTTATATACATATGGTTGATTTACTTCATTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305957 lncRNA upstream 63093 50894287 ~ 50894921 (+) True G269290
TU305956 lncRNA upstream 64642 50893136 ~ 50893372 (+) True G269289
TU305946 lncRNA upstream 82515 50875289 ~ 50875499 (+) True G269279
TU305896 lncRNA upstream 148261 50804590 ~ 50809753 (+) True G269231
TU305889 lncRNA upstream 167959 50788800 ~ 50790055 (+) True G269224
TU306001 lncRNA downstream 53 50959498 ~ 50959805 (+) True G269334
TU306006 lncRNA downstream 547 50959992 ~ 50964940 (+) True G269336
TU306026 lncRNA downstream 25176 50984621 ~ 50985007 (+) True G269356
TU306035 lncRNA downstream 35166 50994611 ~ 50995038 (+) True G269365
TU306036 lncRNA downstream 36642 50996087 ~ 50996330 (+) True G269366
XM_021597249.2 mRNA upstream 339253 50601983 ~ 50618761 (+) False LOC110520146
XM_021597250.2 mRNA upstream 339253 50601983 ~ 50618761 (+) False LOC110520146
XM_021597251.2 mRNA upstream 339253 50601983 ~ 50618761 (+) False LOC110520146
XM_021597252.2 mRNA upstream 339253 50601983 ~ 50618761 (+) False LOC110520146
XM_036974515.1 mRNA upstream 339253 50602807 ~ 50618761 (+) False LOC110520146
XM_036974548.1 mRNA downstream 105729 51065174 ~ 51110275 (+) False uggt2
XM_036974549.1 mRNA downstream 105729 51065174 ~ 51110275 (+) False uggt2
XM_036974550.1 mRNA downstream 105729 51065174 ~ 51110275 (+) False uggt2
XM_036974551.1 mRNA downstream 105729 51065174 ~ 51110275 (+) True uggt2
XR_002472950.2 mRNA downstream 189099 51148544 ~ 51193321 (+) False LOC110520162
TU305958 other upstream 57737 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 353198 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 774988 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 1102512 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1402176 49554498 ~ 49555838 (+) True G267381
TU307177 other downstream 614535 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2207507 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2261982 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2331885 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 2689380 53648825 ~ 53652431 (+) False G272965

Expression Profile