RNA id: XM_036974278.1


Basic Information

Item Value
RNA id XM_036974278.1
length 4386
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110504149
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45852182 ~ 45884194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCCTCTGGTGTTTCAGTCTTGAATCTATCTGCCAGAGAGACGACTATGAAGAGGTTAACACATTTCATCACGATGTCTCTTCCCTCCTGACCGTGTAATCGAACTTTAGTGGTGCATCCAAAGAGGGGTTCAAATGACTTTTTGAGCATTTAGTGGGTGTGCTGAATCCTGCAGATTACGAACTCTGCAGGACATCCAATGAAAacaacaacaccttaattgaattGGGGATTGGCGCCTCTCACTTTTTAATTTaacgttgttgtttttttgaaGGACACTCTCATCATGACGATTCCATTATCTCGGACTCAACTAGCCCTGTTTTTCATCCTCCTGTGTCCGGTCAATATCATTGGGTTATGGTGGGCAGTGGGGAGCCCTCTGGTCATGGACCCCAATAGTATCTGTCGGAAGACCAAGCGACTAGCGGGCAAGCAGGCTGAGCTGTGCCAGAACCAGCCAGAGATCGTCCACGAGGTCGCCAAGGGTGCCAAGCTGGGTGTGCGGGAGTGCCAGTACCAGTTTCGTTTTCGCCGCTGGAACTGCACCAGTCAGAACAAGTACTTTGGCAAAATACTCCAACAAGACATCCGGGAGACAGCGTTTGTGTACGCCATCACAGCGGCTGGGGTGACCCACACGGTGACTCAGGCCTGCAGTATGGGGGAGCTGCTGCAGTGTGGCTGTGAGGCGACCAGGAGCAGGGCTCCCCCCCGgcctgcctcctcctccaccaccacctctggCGAGGGAGTCAAGTGGGAGTGGGGCGGCTGCGGAGACGACGTGGAGTTTGGCTACGAGAAGTCCAAGCAGTTCATGGATGCCAAGAGGAAAAAGGGCAAGAGTGACATCAGGACGTTGATCGATCTCCACAACAACGAAGCAGGACGACTGGCGGTGAGGAATTATATGAGGACTGAATGTAAATGTCATGGCCTGTCCGGGTCTTGCACACTCCGGACCTGCTGGAAAAAGATGCCTCACTTTCGCGAGGTGGGTGATCGCCTCCTAGAGCGGTTCAATGGCGCTTCCAAGGTGATGGGAGGCAATGATGGCAAGACCCTGGTTCCCGTAGGCCAGAACATCAAGCCTCCGAACAAACAGGACCTGATCTACTCGGCCGAGTCGCCCGACTTCTGCTCGCCCAATAGGAAGACGGGCTCGCTGGGCACGCGGGGCCGCATGTGCAACAGCACAGCCATGGACGTGAGCGGCTGTGACCTGCTGTGCTGTGAGCGTGGCTACCGAGACGAGACGGTGGTGTTCGAGGAGAACTGCCTCTGCCGCTTCCACTGGTGCTGCGTGGTGCAGTGTAAGAAGTGCTCGGTGAGGAAAGAGCTCAGTCTCTGTCACTAGCATTACCATAGTGAAGCTGGGTTGGCTTCAGGCCTGGCCTCTTCTGCCTCACACGAAAGATGCACTGAGATCATGCTCCCACAGTTCAATTCAGGAGCACGCTGAGAGATTAGTATCTTATCTAGGATCATCTTGGACAGACAGCTGCGGTAACTCTTCTCTCAAGCTGTAGAACAGTCCAGAATGGCCGCTACTCCAGTGCTCACCACATAGAGCTCTATGACCCAGAAACGGAGGCTCTTTTAGGCTCTTTTTCTAGAAACCCACTGGAGGAACTTACCCAACAACTGTTCCAGCTCTCCAGAGTGGAATATTGAAGGTCACATCTAAGGTTAAAAGTTCAAATTCAGCTCCGAGAACGCTCTAGAACAGAACGGTTCGGTCCCATCTCATAGAAGACCATCAGACAGCTTGGTACCATTCTCAGTCGTCGGTACGGAGGTCGTTGCCTctaaagcagtggttcccaaacgtgtTTGCGCAGTGACCCACCTCAAGCCTTTCGCCATTGAAAATGGACACGCACAACGTGGAATACAGGTATCAAGCACAAAACGTATGAAAAAGGGAAATCTGGGGATTAGTTTGTTTGGAGGACGAACCCCATCACGTTTCATGGTGAGGAGCTGAACTGACACCCGAGACTATTATTTATGGACATTTTATGACAAGACTACTCATAGTGATAAGGTGAGGAACGTGCCTAACGTCTCTCTCTGAAAAGCACTTTGGACATGGGAGCTATCTCTGTGAACCATATGTTACATTGGTTGTTGTTTGAGTAGTTTGCAAATGGAGAAACGTGTTACAACTTTCTTTGTTTTTTCGTTCGAGGTGCAGTATCGAGAAAGTATAATATTATGTTTATCTGTTTAATATACAGGGCTTTTGTAATGCACTTTCAATTAAAGCATTTGCTGCGTGTAGATTTGTTACATATAAGTCATGTTGTGCAGAATGGCCATTCCACAATCACATACAATGCTGACAATGaatccatccatttgtctctTTGATAAGTCAACTCGCTGAAGTGAGTTGGACGTCAGGAAGACCATTTCTTTTGACTCTCTGCCTACGTTCTTCGGAATAGGCAGATCAGATCTCtgcttattttttaaatttttttttttggggggggggggacaaaacctATCTTCACCGTCATTAATGATTACAATTACTTACGAAGCGTGTTGTACCCAAACGCGCTGTACATTTTCACTTTTTACGTGTATAGGTCGAAGGTATTCAAGTGTACTGTGTCTTACCCTTCCTTTAGAGTATGATTTTGTTGCTACTTACCTTTCAGGGATCTGTAAGATCTTTTGTtgggcaaaagagagagagagagagagtacaatgAGGGATGACATCGCTACAATTTATTGCCAATATGCCATGGTTTATGACCAGATTATTCCTTGCCAGAGGGTTCATCGTTAATATTGTTACCATGACAGTGGATACACACTGCACAGGATTACTCTGTCCTCGGAGCTACTAGTCCTGTCTGTGGAGTCAGCACCATTCAATTTTTAATTTACCTAAATGTAGTTTTTGTACAAAAGCATATCACGTTAAGGGATAAAAACTTGGTATAGTGGAACTATTCTGACTGAGCTCTGCAACAATATTAGGCATTCTTCACATGGTAGAGTGGTCAACTATTCTGACTGAGCTCTGCAACAATATCAGGCATTCTTTACATAAGCAGTAGAATTGGCCACTTTACCATGTTACGTTTGGGTTGCAGTCTACCAAATCAGGAAATCAGACCAAATGTGGCTATTCCTATGTGAGacacactcagtggccagtttattaggtacgccttgttcacgaaaatggttcgctcctacagagAGTGAGTCACGTGGCTATGGCTTGCTATATCAAGCAGGCAGACgggcattgaggcattcagttactgttcgattgaacgttagaatgggcaagacgagtgacctaagcgacgtTGAGTGTGGCATGATCAttggtgccaggcacaccagttccAGTACCTCGGAAATTGCCGGCCTCCTGGGTTTTTCACGCACAACAGTGTCTAGCGTTTACTGAGAATGgtgtgacaaacaaaaaaaacatccagtcagtgtCAGCCCTGTTGGGGAAAATAGCTTGTTGATGAGAAAGGTCGAAGGAGAATgacaagaatcgtgcaagctaacagggggggccacaaacagacaaataccGGTGCAGTagaacagtggtgtgcagaacagcaTCACGCAGCGTACAACTTGTCACGGATAGGCTATTGCAGTAGATTCCACTCCTATCAGTCAAAAACTacaagaagcggctccagtgtgcatgcgatcaccaacactggacaactgagggtggaaaaacattgcctgttccgacgaatcccgtttcctgttGAGTCGTCAGGATTTGCCATAAGCATTATGAGTCCATggtccatcctgcctggtgttaaCGGTATatgctggtggcggtggtgtgaTCGTGTGATGGTGTGTGAAATGTTTTCCTAGCGACGTTTGAACaccacaccttgtagaatccacgctgttctggaggcaaagggggaggggggggggtctgacccagtactagatgggtgtacctaaaaAACTGGCCATTATATTTCCCCCATAGAACAACTTTAGGACTTGTTGGGCTGCCAGGAGTTTTCCGATGTTACTGCATGTATGTTTAAACAGCCCTTGTCAAAATGGAAGACAGCTGCTTTGACGGTTTGATTCAAGGCAAGACCCAATTTCCAAGTTTTGAAAACATCATTTTGTCAGGGCATGTTGAATGATCTAAAGAGAAGTCGTCAGCATTTGTTTGGGTTCAGAGACAGGATTTTGACTTCCATAATTGCTTGTTCATTGATTAAACTTTTGTATTCTACAAAGTTAGTTTCATATCCATTTTGTTATTTTCCAGTTACAGTATGTGTAGAAATTGGAATGAATTGACAAGTGAGCTTCTGCATTTACTATACAAATAAAAAGTCAACTGT

Function

GO: NA

KEGG:

id description
K00445 WNT6; wingless-type MMTV integration site family, member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299679 lncRNA upstream 7341 45844404 ~ 45844841 (+) True G263554
TU299678 lncRNA upstream 9115 45842854 ~ 45843067 (+) True G263553
TU299677 lncRNA upstream 9724 45842203 ~ 45842458 (+) True G263552
TU299675 lncRNA upstream 11419 45840534 ~ 45840763 (+) True G263550
TU299673 lncRNA upstream 16132 45834277 ~ 45836050 (+) True G263548
TU299807 lncRNA downstream 4587 45888781 ~ 45889224 (+) True G263680
TU299813 lncRNA downstream 9746 45893940 ~ 45894246 (+) True G263686
TU299817 lncRNA downstream 16512 45900706 ~ 45900946 (+) True G263690
TU299842 lncRNA downstream 50316 45934510 ~ 45934780 (+) True G263711
TU299790 lncRNA downstream 53043 45937237 ~ 45937786 (+) True G263663
XM_021596998.2 mRNA upstream 28881 45726239 ~ 45823301 (+) True asic4a
XM_021596999.2 mRNA upstream 30891 45726237 ~ 45821291 (+) False asic4a
XM_036974276.1 mRNA upstream 30907 45726237 ~ 45821275 (+) False asic4a
XM_021596996.2 mRNA upstream 272179 45571665 ~ 45580003 (+) False LOC110520030
XM_021596997.2 mRNA upstream 272179 45571665 ~ 45580003 (+) True LOC110520030
XM_021597002.2 mRNA downstream 19471 45903665 ~ 45933022 (+) True LOC110520033
XM_021597003.2 mRNA downstream 124005 46008199 ~ 46010647 (+) True LOC110520034
XR_005046468.1 mRNA downstream 148571 46032765 ~ 46043845 (+) True LOC118957146
XM_036974285.1 mRNA downstream 457654 46341848 ~ 46441801 (+) False LOC110520040
XM_021597013.2 mRNA downstream 459052 46343246 ~ 46441801 (+) False LOC110520040
TU299672 other upstream 12702 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 1326774 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1599631 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5400002 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 5400002 40440069 ~ 40452180 (+) True LOC110519969
TU299841 other downstream 49925 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 191290 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 299940 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 946814 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 946814 46831008 ~ 46832244 (+) False LOC110520046

Expression Profile