RNA id: TU299902


Basic Information

Item Value
RNA id TU299902
length 2017
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G263769
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46019689 ~ 46021765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGGATGATGCTTTTATACAACATGGTTGACGTACTTATGCATTATGTGATAATTCGGCAAAATTAAATGTAGGCCTATGTAAAATAACATCGCACAATTTCATTCATGATATCAACTGGCATTTTTAGCCTACAATTTCAAATAAATAATTTCTACAAGGTTTAAAATTATAATTAAATAATCTATTGCTTTTTTTCATGCATAAAATGTCAAAATACAACGTATAAAAGGAAAAAACAAACGTGGTTGTTGTCAAAACTAAAGGAGATACCTGCACTGTTTCGTAGACTGCCTGTGTATGTCTAAAGTaggcttaaaggcccagtgcagtcaaaaacgtgattttcatgtgttttatacatatatataaatatattccacactatgaggttggttTATTACTGTTAAATTGTGAAAATTaggataatgcccttttagtgccCTTTTAATGTCAGGATAATGCCCTTTTAATGTCAGCctgtttggtgggatggagtattggcctacctggtgacatcaccaggcgctaaatgagttaatagaccaacaagaatgtatttatttttatttaacctttatttaactaggcaagccagttaagaacaaattcttatttacaatgacggcctaccccggccaaacccgaacgacgctgggccaattgtgcgccgccctacgggactcccaatcacagccggttgtgatacagcctggaatcaaaccagggtctgcaATGAAAGAGAGTtcaaaacctctctgccaataacagctaattttccgttttcccctccccactcagaccactcccagacagtactaacaaaattcttgcttgagaaattgctcatTGCTATTTtcttctttttgaccatttgaattgaaaacaaagacagtaaggtacttaatagttacccagaaatgatttgatattgagataaacaCGTGTGCATTGGAACCTTAAAATAACCAAGGCTATTTAAAGTGGGAGTCATCGGGGAATATATTGGCGACGACAAATCTTTATCTCCATAATGTTTTTAGACCGGCACTAATAATCCTACTTTGAAATTGGTGCACTGCAAGGCTATCTGAGAACAATTCCGTATTTATATGTTTAATTAATAGCCACGTGATGGCGCTAAAAGCACAGGCAATTTCAGAGGTGTAGGCACCAGTGTCCTGTCGAATCAAAGACCAAATAAATTGGAAAGAAAAGGGTTCTTAATCTGGGTTTAGTCTAAAATACACAGCCTATCTGAAAACGCATGTTATTACATTTGAAATATTGCACAAAATGTTTAATGAATTGCGCCTTGGCATATTCAGTTAGGATCAGACAATGTCTTGGGTTCACAAGATAACATTTCGAAAGGAAAAATCATCATTAGGCCTAATCCAAAAAGGCACGCTTTTAACTACATCAATCGTCAATAATTATGATTAGGCCTCATTGGTGGATTAATAGTAGTCAATTGTAGTGGTTATTGATATTATTCaggttgttgatgttgttgacaCAGTTGATGTGCGAAGCGGACACAGCACCAAATGGTCCCGGGGGTTGGAGGTTGTGACTGTGGTAGAGAGTGGGTGGCGAACCCGGCCAATAGGAGAATCCGGACGGACCAACGCCTGGACCAACGAGGCTTAGCTTGGAAATCCCTGAAAAGGGAATAGGGGCAAAATTACTCTGGAATTTATAAAGCGCTTGCTCTGTTGTTGAGGGTTGACACACCTGGGCCAAGCCGTGAAAGTCGAACTTGTAAGCATATCGCTTCCCATGGACCTTTGTCATGATGTTTTTGTCGTAGTAGTACCGCAATGCGCGGCTGAGTTTGTCGTAGTTCATGTTGGGCTTGCTTTTGCGCTCGCCCCATCGCCGGGCCACCTCATCCGGGTCAATTAGCTTGAATTCTCCGTTCGTCCCTTCCCAGGTAATGCAGGACATGTTGGCGCTGTCTGACAGGAGTTCGAGGAGAAACTGCCATAGCTGAATCTGTCCACTACCTATTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299897 lncRNA upstream 7229 46012233 ~ 46012460 (+) True G263764
TU299896 lncRNA upstream 7469 46012021 ~ 46012220 (+) True G263763
TU299893 lncRNA upstream 15576 46003868 ~ 46004113 (+) True G263760
TU299891 lncRNA upstream 17110 46002349 ~ 46002579 (+) True G263758
TU299890 lncRNA upstream 18081 46001388 ~ 46001608 (+) True G263757
TU299864 lncRNA downstream 26284 46048049 ~ 46056003 (+) False G263732
TU299865 lncRNA downstream 26284 46048049 ~ 46056003 (+) True G263732
TU299934 lncRNA downstream 62611 46084376 ~ 46085016 (+) True G263798
TU299973 lncRNA downstream 136284 46158049 ~ 46158282 (+) True G263837
TU299978 lncRNA downstream 141775 46163540 ~ 46163769 (+) True G263842
XM_021597003.2 mRNA upstream 9042 46008199 ~ 46010647 (+) True LOC110520034
XM_021597002.2 mRNA upstream 86667 45903665 ~ 45933022 (+) True LOC110520033
XM_036974278.1 mRNA upstream 135495 45852182 ~ 45884194 (+) True LOC110504149
XM_021596998.2 mRNA upstream 196388 45726239 ~ 45823301 (+) True asic4a
XM_021596999.2 mRNA upstream 198398 45726237 ~ 45821291 (+) False asic4a
XR_005046468.1 mRNA downstream 11000 46032765 ~ 46043845 (+) True LOC118957146
XM_036974285.1 mRNA downstream 320083 46341848 ~ 46441801 (+) False LOC110520040
XM_021597013.2 mRNA downstream 321481 46343246 ~ 46441801 (+) False LOC110520040
XM_021597014.2 mRNA downstream 321494 46343259 ~ 46441801 (+) False LOC110520040
XM_036974293.1 mRNA downstream 321501 46343266 ~ 46441801 (+) False LOC110520040
TU299841 other upstream 85271 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 180209 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 1494281 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1767138 44252069 ~ 44252551 (+) True G261749
TU292452 other upstream 5567509 40440069 ~ 40452180 (+) True LOC110519969
TU299866 other downstream 53719 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 162369 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 809243 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 809243 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other downstream 809243 46831008 ~ 46832204 (+) True LOC110520046

Expression Profile