pdxka (LOC106586273)


Basic Information

Item Value
gene id pdxka
gene name LOC106586273
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51490352 ~ 51500089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597294.2
ATTTCACAAGCAAGTTCAAAGGATCTCACTTCCGTATCACCGCCTTTAAAGTTGAATGTGTCTAAACAAACTGTGTTTGTCTAACTCCGACCCTATGCAACCCATGCATGAATCAATTTGAATGTCAGTTTACATTGGGATAGTCTGATTGATTAATTTATTGTATTATAAACTTGTAAATCATTATCCACTTGAGGCGCCGTTGACTTAGGTGTCCATATATTTGCCTGAGATATTGCAGCCAGTCAGTCTTCTGGAAGTGTGTCAATGTGGTATCGTGTTAGTTTTTTGTAGTGTACACAGCCCAGTGGAATGAATATTGCTGGAGTTTTCTCATTTGCATTGAGTTTTCTCGTGTAGCTAAACGTTCGTGTACcggatcaaaaaaaaaaaaaaaaaaaaattgctcaAGCGTAGTTAGTTGGCTCGGACACGAATGAAATCTTATTCCACAGTCCTCGTATCTTTAAAATTTAACTATTGAAATGGAGTGCcgtgtgttgtctgttcagagtCATGTGGTCAGGGGATACGTCGGGAATAAATCGGCAACATTCCCATTGCAGGTGCTGGGGTTTGAAGTGGACTCCATCAACTCTGTGCAATTCTCCAATCACACAGGTTACGCTCATTGGAAAGGGCAAGTGCTGACGGCAGATGAGCTGAACGTTCTCTATGAGGGTATCAAACTCAATAACGTCAACCATTATGACTACGTCCTCACAGGGTACACCAGGGACACATCTTTCCTAGAGACGGTGGTGGACATTGTTCAGGAGCTGAAGAGGTTGAACCCAAAACTGGTGTACGtgtgtgatCCAGTGATGGGAGACCAAGGATCTATGTATGTGCCTGAGAATATACTGCCTGTTTACAGAGACAAAGTCGTAGCAGTGGCTGATATCCTCACACCCAACCAGTTTGAGGCAGAGCTGCTGACGGGGAGGAAGATCAGCACAGAAAAAGACGCTCTTGAGGTGATGGACCTGCTCCACCAGATGGGCCCTGACATGGTAGTCCTCACTAGCACAGACCTGATCTCTCCTCACGGGGACCAGTTCCTAGTGGCCCTTGGAAGCCAGAAGATGGTGAGAGCAGATGGGACTACGTCCACCCAGAAGATTCGTATGGAAATGCCCAAGGTAGATGCAGTGTTTGTGGGAACAGGAGACCTGTTCGCTGCCATGCTGCTGGCCTGGACCCACCACCACCCCAAAGACCTGAAGGCTGCCTGTGAGaagactgtctctgtcctgcacCATGTTATCAAGAGGACCATTACCTATGCCAACAAGATGGCCGGCCCTGGTAAGAGACCCAGCCCTGCTCAGTTGGAGCTGAGGATGGTCCAGAGCAAAAAGGACATTGAGTACCCGGCCATTGTAGTGGAGGCCATCGTCTTATAACCCAATGCCTCATAAATAGACATGGGATTTTTACACCATGAAATGTCATTTGACTTTGCCTTATAGGATCTCGTAGAGAGCACTTTGTTTTCAGTCTGGGTATTTGCCCTGCGCACCGCACACACTCTTATCCTTAATCACTGCCATGTGTCTTTACTATGACCTGAGCATTGTCACCCATTGGAAACATGGTAGATGTTATTAGAGGACCAAAAACAGGGTGTGGGTATTACCATACATCAGAATAGAGAAGTGGAGGTATGGATGCCTGATTGGCCCTCAATTTGGCATTGGCATGGAATGGGCCCTGAGTTTCCCCTGACAACGTGAGCTGACCAGGGAATTCTCTGAGCCTCAGTTATGGGTTAGGGATAGATCATAGGCTTTTATCAGATACATTGATGCATCAACATGAGTTGTGCTACCATGATCATGTTATGCAATACTAATCTGTGCACATTTGATTGTTGGATTTTCAATTGTCAATGTTCCATTTTAGGCAAAAAGTATATAATTTGATAGTTTGACAATTCTAGatgttttcatatttttttattatgtaaATGATTAATAGATGTTCATTTTACTTGTACTATTAATGTGCTTTGTCTGTCCTAATACTAATACTTGTTATATAATTCCTAAATGTCTAACACATTTCAAACGGAGGTACCAATATTTGCACAGATCGTCTTGATAAACATGTTTATCATTAATTGTAATCATTAAATATTTTTCATGGTCTTGATTGTCTCACTATTTTCATATCCTTACTAGAACACAGGCCTATGCCGATATGAAAAAGTACAAATTGGCCTTAGCAGAGTCTGTTAGAGGAATATGTTTTGTATCTGTGCCTGCAAAGGTAATTAAATAAATCTTTACACAATGTTAGAAAGATAAGTGCCAAACTTGAAGCTGTAGCTCTGAGATGGAGTGAATATAATAAATGATGAGGAA

Function

NR:

description
pyridoxal kinase-like

GO:

id name namespace
GO:0009443 pyridoxal 5'-phosphate salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0008478 pyridoxal kinase activity molecular_function

KEGG:

id description
K00868 pdxK, pdxY; pyridoxine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597294.2 True 2366 mRNA 0.42 11 51490352 51500089

Neighbor

gene id symbol gene type direction distance location
LOC110520165 LOC106586271 coding upstream 213941 51267073 ~ 51276411 (+)
LOC110520164 LOC100137092 coding upstream 228136 51258792 ~ 51262216 (+)
LOC110520163 LOC106586270 coding upstream 259521 51228485 ~ 51230831 (+)
LOC110520162 LOC106586269 coding upstream 290591 51148544 ~ 51199761 (+)
uggt2 LOC106586268 coding upstream 380077 51065174 ~ 51110275 (+)
LOC110520168 LOC106586274 coding downstream 4432 51504521 ~ 51532634 (+)
LOC110520169 il1rl1 coding downstream 73916 51573980 ~ 51582567 (+)
LOC110520171 LOC106586099 coding downstream 121265 51621354 ~ 51624586 (+)
LOC110520174 LOC106586278 coding downstream 259167 51759256 ~ 51766986 (+)
LOC110520177 LOC106586282 coding downstream 880842 52380931 ~ 52442609 (+)
G270337 NA non-coding upstream 17193 51472954 ~ 51473159 (+)
G270336 NA non-coding upstream 17407 51472586 ~ 51472945 (+)
G270335 NA non-coding upstream 18220 51471603 ~ 51472132 (+)
G270289 NA non-coding upstream 68027 51422033 ~ 51422325 (+)
G270288 NA non-coding upstream 68689 51421174 ~ 51421663 (+)
G270298 NA non-coding downstream 34298 51534387 ~ 51536375 (+)
G270363 NA non-coding downstream 37558 51537647 ~ 51538128 (+)
G270369 NA non-coding downstream 49640 51549729 ~ 51549937 (+)
G270371 il1rl1 non-coding downstream 50662 51550751 ~ 51606548 (+)
G270374 il1rl1 non-coding downstream 52023 51552112 ~ 51608618 (+)
G269291 rap2a other upstream 590075 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 885536 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 1307326 50162278 ~ 50184327 (+)
G267529 NA other upstream 1634850 49836617 ~ 49855502 (+)
G267381 NA other upstream 1934514 49554498 ~ 49555838 (+)
acvr2aa LOC106586327 other downstream 1666863 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 1721338 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 1791241 53291284 ~ 53339392 (+)
G272965 NA other downstream 2148736 53648825 ~ 53652431 (+)

Expression


Co-expression Network