LOC110520174 (LOC106586278)


Basic Information

Item Value
gene id LOC110520174
gene name LOC106586278
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51759256 ~ 51766986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597302.2
GACTACGGGCAAAAAAGACAATTTCACGCGTTATTATCGCGCCTCGACATAACTTGCATAGAGGGTGATTTTTGGGTCAGATTTGCGGGTCTGGTGGTAAAATCATGGCGTTACGGGTGATTCGTTTGGTCATCCCCTCGGGGACAGCCGTTTTCAAAGCAGGGACACTTATTCAGACGGCTGGTATTCACACAAGCTCATTAAGGAACCTACGGTACGGCTGGTGGGCATATGCACTGGGCGAGAGGACAACCCCAAGGTTCAAAGAGAACAGCAAGATCATCTCCATTGATGGCAACCTGGCCTCGGGAAAGGGGGCGCTGGCCAAGAGTCTGGCTGATAAGCTGGGGATGCTGTACATGCCTGAGCCCAACACGCACTACTTGGACAAGATGACAGCGGAGAAGGAGCCTCTGCCTATCGCCTTCAACGGTAACTGCAGCTTGGAGAAGTTCTATGCAGACCCCAAGGCTGCTGACGGGAACTCCTACCGGCTACAAGCATGGATGTACCTCATGAGGCTCCTTCAGTGGTCAGATGCCATGGAGCACCTGCTAACCACAGGCCAAGGTGTGATCTTGGAGCGCTCCCCCTACAGTGACATGGTGTTTGTGGAGGCCATGTTCAAACAGGGATACATCAGAAGGCAGTGTGTAGACCACTACAATGAAATCAAAGGTATCAGCATCTGTGAGTTCCTGCCCCCTCACTTGGTCATCTATGTGGACAAGCCAGCGGAAGAAGTGCAGAAGAAGCTAAAGGCATCAGGCAAAGATGTACCCCTACCCTATCTGAAGAGCATTGAGGATGCCTACAAGAAGACCTACCTTCCCAAAATCAGtGAGAATGCAGAATTGCTCGCTTATGATGCTACCCAAGCACAAGACATGGAGAGGATTGCAGAAGACATTGAGGACTTGAAATTTGAGAAAGGACCTTGGGTAGAGCAGGATGATGTCACACTCcactacatgagaatgctGGTGGAAGACAAGATGAGGGTTGCAGACCTGACCCTTGTACCCAACTTCCTGCCTGAGGTCACCATTGGGGCTCACGAGTATGACGCAGGCTACTATGCCTTCAAATCAATCCTGGGAAAGAAGTACGCTGCAGGTTATAATGCAGACATAGGAGACACGAACATCTGGCTGAAGTGAATGAGTGGACCTGACTACTCTGGAGCTGATTGCTGTAGATGAATGGTTCgttcctcattccctccctcaaCCCCCCCACATACCTGTTCACTCCTCCCTATGGGTGGAGAAGTCTAAATATGGGATTATCCGTTTGATCCAATCTGGAACATTCTCTTCTCTGGTCCGACTGTGTGTATTGAGGAGAAATTGTATTATGTCCATGAATTATGCATTAAAAGTAaatctaaaaacttg

Function

NR:

description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial-like

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG:

id description
K03954 NDUFA10; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597302.2 True 1397 mRNA 0.49 10 51759256 51766986

Neighbor

gene id symbol gene type direction distance location
LOC110520171 LOC106586099 coding upstream 134670 51621354 ~ 51624586 (+)
LOC110520169 il1rl1 coding upstream 176689 51573980 ~ 51582567 (+)
LOC110520168 LOC106586274 coding upstream 226622 51504521 ~ 51532634 (+)
pdxka LOC106586273 coding upstream 259167 51490352 ~ 51500089 (+)
LOC110520165 LOC106586271 coding upstream 482845 51267073 ~ 51276411 (+)
LOC110520177 LOC106586282 coding downstream 613945 52380931 ~ 52442609 (+)
LOC110520178 LOC106582420 coding downstream 741789 52508775 ~ 52567291 (+)
LOC110520179 arl4c coding downstream 818025 52585011 ~ 52587048 (+)
LOC110520180 LOC106586330 coding downstream 941385 52708371 ~ 52760376 (+)
LOC110520185 NA coding downstream 1107942 52874928 ~ 52942773 (+)
G270497 NA non-coding upstream 6337 51752686 ~ 51752919 (+)
G270451 NA non-coding upstream 75830 51683178 ~ 51683426 (+)
G270374 il1rl1 non-coding upstream 150638 51552112 ~ 51608618 (+)
G270371 il1rl1 non-coding upstream 152708 51550751 ~ 51606548 (+)
G270483 NA non-coding downstream 1137 51768123 ~ 51769068 (+)
G270486 NA non-coding downstream 2483 51769469 ~ 51770130 (+)
G270484 NA non-coding downstream 3624 51770610 ~ 51771617 (+)
G270795 NA non-coding downstream 85761 51852747 ~ 51853056 (+)
G270862 NA non-coding downstream 165882 51932868 ~ 51936398 (+)
G269291 rap2a other upstream 858979 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 1154440 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 1576230 50162278 ~ 50184327 (+)
G267529 NA other upstream 1903754 49836617 ~ 49855502 (+)
acvr2aa LOC106586327 other downstream 1399966 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 1454441 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 1524344 53291284 ~ 53339392 (+)
G272965 NA other downstream 1881839 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 1890475 53657461 ~ 53658683 (+)

Expression


Co-expression Network