LOC110520178 (LOC106582420)


Basic Information

Item Value
gene id LOC110520178
gene name LOC106582420
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52508775 ~ 52567291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597312.2
CATCGCGAAGTCATTCGCCAAAGACTGTGGACTCACACTAGGCTACAACTGGATAGTCGGAGCACGCAAAACTACGCCCATTTgatgcatttatttcaatggaCTTATTCACAGGACTTTTACAAGAGACTATGAAAGGCTGTTGACGACTAACTCTGCCATTGGCTGAAAGGGAACCCAGGAGAGCAGCCTGAGCACGTAGGTTGTGTGTGCAGGGAAAGAACCAACAATGGCCGCCCATCGAATCAGGGCGACCAACAACATTGCACTGCCACGCTGCAAGTCAGAGGGGACACTCATTGATCTCAGTGATGGAGTCTCTGAATCTAACTGCCTCACAGATGTCAAAGtgCCTTCTCCCAGTGCCTTAAGACTGGACGCCACTGCCTCCTTTGGCACTGCCAGGGAAGTCATTGCAATTAAGGATTACTGTCCCTCCAGCTTTACCACCCTCAAGTTCTCCAAGGGAGAACATCTCTTTGTGCTGGACACATCGGGTGGAGAGTGGTGGTACGCCCACAACAGCACTGAGATGGGTTACATCCCTGCAGCATACGTCCAACCCATCAACTACCGGGACTCCTCATTCAGTGACAGTGGTATGATCGACAGCCTAGGAGACTGCTCTGTTGAGGAGGGAGCCAAGGAGCTGGACCTCCTTGAAGATTGGACCGGGGTGTTCCTGAAACCCACTGCCCCCCAAAACGGGAACCCCTTTGCCCCCCATCACCAGCCCCTTAGTCGTAGCGCCACCAACCCTTTCCTCAATGGAGCCCTTCAGGGTTCGCTGGATCAGAACAGTAATGAAAACAGTAAGTCAGTGGATCTTCTTCTTTTTGACACAGCACCCTCTGTCCCACCAAACTCCACCAGCAGCACTGTCAACATCAATGGCTTTGGCAGTGACATCTTTGATCTGAACCACATCAGCCCCAGCCTGGGAGTGGGCCAGACCTTACGCAGGGACAACCCATTCTTCAGGAGCAAGCGATCCTATAGTCTCTCAGAACTTTCCATCCTGCAGGCTCAGAATGACGCCCCAAAGGCATCCTCCAGTTTCTTTGGAGGCCTGAAAGCACCTGCGCCTGAGCAGTTCCAGAGCCGAGAGGATTTCCGGGAAGCATGGCTCAATCACCGCAAGCAAGCCAGGTCCTGCCATGACCTGGACTCCTTGGGCCAGAACCCAGGCTGGGGCCAAACGCAGCCGGTAGAGACCAACATTGTCTGTCGTTTAGACAGTTCTGGAGGAGCTGTCCAGCTTCCAGACACCAGCATCAGCATTCACATCCCTGAGGGCCACGTGGCCCCTGGAGACACCCAGCAGATCTCCATGAAGGCCCTGCTGGACCCGCCTCTGGAACTCAACAATGACCGCTGCACCACTGTGAGCCCCGTTGTGGAGATCAAACTCAGCAACATGGAGACCAAAACCACAGTCACCCTTGAGATGAACGTGTCAGTTGTGGTGAAGAAGGAGAGCAGACAGACGACAGAGGTCATGTGTGTGAGGAGTGACTGCAAGGAGGGCCCCTACACTCCAATCCCACAGGCGTACATGTATGGGGACACCGTCCAGGTCTGTCTAGATTACCTTGAACCCTGCATGTATGTGTCTGTTGTGGCCCAGGCACAGTCGGTTGCTCCAGGCACCACAGTTTGGGATAACGTGGTGAAAAAGGTCACCCTGGGCGTCTATGGGCCTAAGCACATTCACCCATCCTTTAAGACTGTGGTGGCTATCTTCGGCCATGACTGTGCCCCAAAGACATTACTGGTGAGTGAGGTGGGGAGGCAGGCCCACTCTGCTCCTCCAGTGGCCCTTCAGCTCTGGGGGAAGCACCAGTTTGTCCTGGCTAGACCACAGGATCTTCGGGTCGGGGTTTACTCCAATATGGCCAACTATGAGGTCAAGGACAGTGAGCAGGCCAGGGTGGTCAGGGGGTTCCAGGTCAAACTGGGAAAGGTTAGCCGGCTTGTCTATATGATTGCCTCACGCACTGCTGACGATGTCTCAGATTTCACATTGCGGGTCCAGGTCAAGGATGACCAGGACTGTATTCTCGCCCAGTTCTGCGTTCAAACACCAACACCTCCACCCAAGACTGGTCCACGGACGTCTGCGCAGAGGCGCTTCCTGAAGAAGAAGGAAGTAGGGAAAATTGTTTTGTCCCCTCTGGCCATCACTAACAAGTACCCTGTGTTCCATGACCAACGAATCCACAACCTGAAGTTTGGTAAATTTATCAAAACAGTCATCCGTCAGACCAAGAACCAATACTTACTGGAGTACAAAAAGGGGGATTACGTTGCACTTCTGAGCGAGGAGAAAATCAAACTGAAGGGACAGTTGTGGACTAAGGAATGGTACATTGGTTACTATCATGGTAGGACAGGACTTGTCCATGCAAAAAATGTTCTGGTGGTGGGGAAAGTGAAGCCCATATACTTCAGCGGTGCTGAACTTACCACTACACTCTTACTGGAGCAAATACTTAAGCCCAGCAAGTTCCTGACGTACATCTATGCCTCTGTAAGGACTATACTGATGGAGAACGTAGGAAGCTGGAGGGCGTTTGCTGATGCCCTGGGTTACGTCAACCTACCACTGACACATTTCTGCCGTACAGAGCCTGACAGTGAGCCTGAGAGGGTGGCATCTGTTCTGGAGAAGCTGAAGGAGGACTGCAACAATGCAGAGGGCAAGGAGAGGAAGTCCTTCCAGAAGGAACTGATGACTgCGTTGCTGAAGATGGACTGCCAGGGCCTGGTGGCCAGGCTGGTGATGGACTTTGTCCTGCTGACCACAGCAGTGGAGGTGGCCGGTCGATGGAGGGAGCTGGCTGAGAGGTTGGCCAAGGTGTCCCGTCTGCAGATGGATGCATATGAGGCACCCCACAGAAACAAGAATGGAGTAGTGGACAATGAGGCCATGTGGAAGCCAGCCTATGACTTCCTGCTGACGTGGGCGGCCCAAATCGGGGACAGCTACCGGGACGTGATCCAGGAGCTGCACATGGGCCTAGACAAGATGAAGAGCCCCATCACCAAGCGCTGGAAACACCTTACGGGCACGCTCATCCTTGTCAACTGCTTGGATATGCTCAGGAGCTCCGCCTTCAGCTCCGCCTCTCAGGACGACTGTGCCATCTAGACCAAACtggccatcatcatcaccatcgtcATCCCTCACAGGTTgcaacttgtctcctcccctttcaaTTTCTTTCCCATCAGTATAGCTAAAAgaacgaggaagagagaaagcccCTTTATACTGTTGAGTTGGACCTACAGACTCAGTCTTCTGCTGTCCTTCCAACGTCGATCACCATCCTAACCCAACCCCTGACCCTACCCTTCTGGATCATTTTGCATATCTACCTAAAATGTAGAACATACCTTATTCCCTGTTTTGTATTGGAGATTCTGCACAacagctgcctgtctgtctgctccctcTGAGTCCTGCTTCCTCCGAATCTGCCTTCAGTCTCTCACCCCCGGGAGGACGAGAGCACTAGACTGCCCCCCTCACCCACCAACCTTCGTATTGCCACCAGCCAAACTACACAATGCTACAGTCTCAGTATTCACAAATACTATTTTAACTGTCACTACCTGGCATGGTATGTATTTTTGTACTCTAAATATGGCACCACATTTTTTTTAAGACTCTTTGACACCTTCCGTTCATGACTGTGGACTCGACCCATTACTAAGAGGATAAACTTTTGAAATGGTGTCCATGTTCTTTAGTCTTTGTCACGTGTGTCAAACAAGCTGAATACGTTTATTTATAAAGCTCTGTAATTGTTAAGATGAACGTGCACTCTTGTTGTTCAGGGTTTCCTCCGGCTGtggtccattttttttttttccccaacTCATTTGTTTGAGAACTGTGTATATTTCAAATAGTCTTTCTGCTTCTTCTCTCGCCTCTCTATCACCTCGTTCTTTTAAAAGGAACCTTAAATGCCTgccgttgtttttttttttactccttttTTAAAGATATTTTGTATCAAAGCTTGTCAGCAGTTAATATGGTTTCACATATAGCTACTGTAGATGGCCTCATTCAATGTCCAACCACTGTTGTGCAATGCTAATTCTATGTTAAAGATCATGTATATGTTTCGACCACTGTATGTGTTGTGTTCCGTGATGAGTACTGTATAGCTTGCTTCATGTTCACCCACATTTTGCCTCCGTTTTGACTGCATACTTTTGTGGAGAATAATAtgaataaaatgtaaatatttatACACAA

Function

NR:

description
SH3 domain-binding protein 4-like

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061462 protein localization to lysosome biological_process
GO:0034260 negative regulation of GTPase activity biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0010508 positive regulation of autophagy biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0005634 nucleus cellular_component
GO:0005092 GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K20066 SH3BP4; SH3 domain-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597312.2 True 4273 mRNA 0.50 5 52508775 52567291

Neighbor

gene id symbol gene type direction distance location
LOC110520177 LOC106586282 coding upstream 66166 52380931 ~ 52442609 (+)
LOC110520174 LOC106586278 coding upstream 741789 51759256 ~ 51766986 (+)
LOC110520171 LOC106586099 coding upstream 884189 51621354 ~ 51624586 (+)
LOC110520169 il1rl1 coding upstream 926208 51573980 ~ 51582567 (+)
LOC110520168 LOC106586274 coding upstream 976141 51504521 ~ 51532634 (+)
LOC110520179 arl4c coding downstream 17720 52585011 ~ 52587048 (+)
LOC110520180 LOC106586330 coding downstream 141080 52708371 ~ 52760376 (+)
LOC110520185 NA coding downstream 307637 52874928 ~ 52942773 (+)
acvr2aa LOC106586327 coding downstream 557365 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 coding downstream 606973 53174264 ~ 53235027 (+)
G270862 NA non-coding upstream 572377 51932868 ~ 51936398 (+)
G270795 NA non-coding upstream 655719 51852747 ~ 51853056 (+)
G270484 NA non-coding upstream 737158 51770610 ~ 51771617 (+)
G270486 NA non-coding upstream 738645 51769469 ~ 51770130 (+)
G270483 NA non-coding upstream 739707 51768123 ~ 51769068 (+)
G271855 NA non-coding downstream 38983 52606274 ~ 52606501 (+)
G271858 NA non-coding downstream 40531 52607822 ~ 52608280 (+)
G271878 NA non-coding downstream 53480 52620771 ~ 52621041 (+)
G271885 NA non-coding downstream 57811 52625102 ~ 52625348 (+)
G271900 LOC100136012 non-coding downstream 67804 52635095 ~ 52635354 (+)
G269291 rap2a other upstream 1608498 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 1903959 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 2325749 50162278 ~ 50184327 (+)
G267529 NA other upstream 2653273 49836617 ~ 49855502 (+)
LOC110520190 LOC106586322 other downstream 724039 53291284 ~ 53339392 (+)
G272965 NA other downstream 1081534 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 1090170 53657461 ~ 53658683 (+)

Expression


Co-expression Network