LOC110520177 (LOC106586282)


Basic Information

Item Value
gene id LOC110520177
gene name LOC106586282
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52380931 ~ 52442609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597311.2
ACTGCTGATGGGGGAGTGGTTTACTTTTCCACTGGGCTTCAAACACACTGCATGACTCCGTCCGCGCTAGGGACATTTGAAGGCATCGCTTTCATGAGATTTACTCTCTTCCTACAACATAAGGATATATCACAGTAGGGAGAATGGAATTGCGAAAGCTGTCTCGGTTATACATCTTCATTGTCTGTCTTTTGAGTGCCTCCAGCTCTGCGTCCGCCGCCAGTCACTATATTTGTAATGGCCCATTGGTATCCATGCTGCCCCCAGCTTCTTTAGAGAGCTCCTCACAGTCCTCTGTCAGTAACGCTCCACACTTTGCCAAGATCAACAGAAGAGATGGAGCTGGAGGCTGGTCTCCCCAggtgacagacagccagccatggCTGCAGCTGGACCTCAGGGACAGGATGGAGGTGACGGCCGTCGCCACACAGGGGCGCTACGGCAGCTCAGACTGGGTCAGCGGCTACCTGCTGCTCTTCAGTGACACAGGCCAAGCCTGGAAGCAGTACCGACAGGAGGATGGAGTGGGGAGGTTTGTGGGGAACGTGAATGCTGACAGTGTCATTCACCACAAGTTGTCCCACTCTATCAGAAGCCGCTTCCTGCGCTTCGTCCCGCTGGACTGGAACCCCAGTGGCTGGGTGGGACTCAGAGTGGAGGTGTACGGCTGTGCCTACAAGTCAGACGTGGCAGACTTTGATGGCAGAAGCTCCCTGCTCTACCGGTTTAACCAGAAGTCCATGAGCACGGTGAAGGATGTGATCTCGCTGCGCTTCAAGAGCCACCAGGCTGAGGGGGTGCTGCTCCACGGAGAGGGTCAGAGGGGCGACTACATCACTCTGGAGCTGCACCGGGGCAGGCTGGCCCTCTATCTCAACCTGGATGACACCCGGCTGCGGTTCAGCAGTGGTCGTGTTGCTGTCACTTTGGGCAGTCTTCTGGATGACCAGCACTGGCACTCTGTCCTCATCGAGCGCTTCAACAAGCAGGTCAACCTCACCATGGACACCCACACACAGCACTTCAGGACCAAGGGGGAAGGAGACTCTCTGGAGGTGGACTATGAGCTCAGCTTCGGAGGCATCCCACTGCCAGGTAAACCTGGTACCTTCCTGAGGAAGAACTTCCATGGCTGCATCGAGAACCTCTACTACAACGGGATCAACATCATCGACCTAGCCAAGCGACGCAAACCTCAGATCTACAGTGTGGGCAACGTGACCTTCTCGTGCTCGGAGCCCCAGCTGGTGTCCACCACTTTCCTGAGCTCCAGCAGCAGCTTCCTGTCGCTCCCGGCCACGCCGTCTGCTTCAGCGGGCTTCGCGGTGCGTTTCCAGTTCAGAACATGGAACCCAGAAGGGCTACTGCTCTCCACCCAGCTGGCCCTGGAGCCCCAGCGACTGGACCTGCAGATAAGCAACAGCCGGCTGCGCTTGACCCATCACACGTCAGCCCAGCAGAAAGAAGAGGTCTCCACCGGTCACAGAGTGAACGATGGACTGTGGCACTCTGTGAGTCTCAGCTCTCAAGGTCTTCAAGTCACCACGACCCTGGACAATGAGCCGTCCTCAACCATCGAGCTGGGGGACCACATGGAGGCAGGAAACAGCCTCTACTTCGGAGGTTGTCCATCTCTGAACATCTTAGGCTGTAAGAACCCCACGTTGGCGTTCCAGGGGTGCATGCGTCTCATCTCCATCAACAGCCAGCCCATGGACCTGAACCGGGTGCAACAAGGACGGCTGGGAAACTACAAGGAGCTGCAGTTTGACACATGTGGCATCCATGACAGATGTCTGCCCAACTTCTGTGAACATGGAGGGCAGTGTTCCCAGTCCTGGAACACCTTCTACTGTGACTGCTCTGGAACAGGATACACTGGAGCCACATGCCACAACTCCATCTATGAGGCATCATGTGAGGCCTAcaggctgactggcggctcctcaGGCTTCTTCTCTGTTGATCCAGACGGCAGTGGACCTCTGGGGCCGACACAGGTCTACTGCAACATGACAGAAGACAAGGTGTGGACAGTGGTGACCCACAACAGCACAGATCCAGTCAGGGTCCAGGGTTCTACTCTCCAAAAGCCCTACGTTATGAAGTTCAACTACAGCGCCTCACCTGAACAACTGATGGCCCTTGTGGCGGGGTCAGAGCAGTGTCGACAGGAAGTGATGTACGGCTGCAGGAAGTCCCGCCTCTTCAACACTAGAGATGGTACCCCATTGTCCTGGTGGGTGGACCAGGGTGGAGAGAGACGGACTTACTGGGGAGGCTTCCTACCGGGGGTTCAGCAGTGCTCCTGCAGCCTGGAGGAAAACTGCATGGATATGAACTACTTCTGCAACTGTGATGCCGACACAGACTCATGGGCTAATGACACAGGAGTCCTCTCCTACAAAGAGCACTTACCAGTGAGTGAGATCGTGATTGGAGACACCAACAGAACAGGCTCTGAGGCACTCTACAGAATCGGCCCACTGCGTTGTTATGGTGACAAGTCTGTGTGGAATGCGGCGTCCTTCTACCAGGAGTCATCCTACCTGCACTTCCCGACCCTCCAGGCAGAGCTCAGTGCTGACATCTCCTTCTACTTCAAGACCAGCGTCCCATCAGGAGTCTTTCTAGAGAACCTGGGCCTCAAGCACTTCATCAGGCTAGAGCTCAGCTCTCCCTCTGTGGTGACGTTCTCCTTTGATGTGGGAAACGGGCCAGTGGTCTTGGCCGTTAAGTCCCACGTGCCCCTGAATGACAGGCAGTGGCACTATCTGAGAGCAGAGCGCAGTGTGAAGGAGGCTTCTCTGCACGTGGACCAGCTGCCCCTGCGCTTCCTGGAAGCCCCGTCTGACAGACACCTCCGCCTCCGGCTCAACAGCCAGCTGTTTGTGGGGGGAACAGCGGCCAGGCAGAGTGGCTTCCTGGGATGCATCAGAACTCTGACTATAAACAGTGTGACCTTTAACCTGGAGGAGCGGGCTAAGATGACCCCGGGGGTAAGCGTTGGCTGCCCCGGCCACTGCAGCGGCTCCAGCAGTCTCTGCCACAACAGAGGGAGATGCATTGAGAAGAACAGTGGCTACGTCTGTGACTGCTCCCAGTCTGCTTACGGAGGACCCTCCTGCAAGGAAGAGGTGTCTGTTTCATTTGACAGAGAGTCGTCTGTGACCTACACCTTCCAGGAGCCTTTCTCTGTGATGCAGAACAGGAGCTCCAAGACCTCCAGTGACTACAGAGAGAGCAGCAGGGCCAGAGAGAACATAGCTTTCAGCTTCATGACCACACAAAGCCCTGCCATGCTGCTCACTGTCAACACCTTCAGCCAGCAGTACATAGCAGTCATCCTGGCACGCAACGGGAGTCTCCAGATCTGGTACAGTATCCATGTGGACAGGAAGCCAGATGTgttcagccccagccccagcagcCTGGCAGATAGACGCCTCCACCGTATCAGAATCCACCGTCAGGGGAAAGATGTCTACCTACAGATTGACAAGGACATGAACCTAAAGTACAGCCTGTCATCAGACGCAGAGTTAATCTCCATCAAATCGCTGACTTTGGGGAAAGTCACAGGAGTGGATGCTGTGGATGAGGAAGTGATGCGGGCAGGATCTAAGGGCTTCATTGGCTGTCTGTCATCAGTCCAGTTTAATCACATGGCTCCACTGAAGGCAGTGCTACTAAATCGTGGCAGCTCATTGGTCACTGTCCGGGGTCACTTGGTGGAGTCTAACTGTGGGACGTTGGCTGACTTGACAATATTGCACTCTCAATCAGATCATTCAGAGACAGTCAGCAGAGGCAAGGGGCCATTAAGGAAGGCTTCAAAAAACAACTCAGTGGTAATTGGAGGAGTAGTGTCAGCGGTGGTCTTCATCACTCTGTGTGTGGTGGCGGTGATGACCCGTTTCCTGTACCAACACCGGGAAGCCCAGAGAGATGCCAGCATCAAGGAGAAGGAGCACCGACACGACCTGGAAACAGCCTACAGGAGAGAAACTGCGTACCAGGCAGAATCAGCCTACCGAACAGAGCTCCACCTCCACCACAGCTCCACCCTCAGGGACAACAGGGAGTACTACATCTGAACACCAGTGTTCCAGTACCCTTGGTCATCAGGGAAGACCTGTTCTCTGTTAGTGGATTTGGAAGTGGAGATGTTGCTGCAGAATCATGGACAACATTCCGGACAAACAAAAGAACCCAGAGCCCAAGCCCAATACCCTTTCACAGGGATTATGCCAGGGCCAATGTCTGATTGTTACAAAACATGTAGGTAGTGGACAGCGAGTTTAGCCAATTTGTAGGGCTGTAAGTGTATTATGTGGTTGGTGGAACTGTTAAACAATATGGAGTGAATATGCAGGTGTGATTGTGAACCATTTCTCAACCAGCAGAAGTAAGAACTGAGATAAAGAAGGAAGGGAAACATAAGTGAATCTCACCTGCCACACCTACTGAATGTGTACAAATTTCCGAAGACATCATTATTCTTGTAACCCCCAATATTCTTCAAGATTTCCCACGGAGTTCTGTGGAGCGTCCTAAATTACATGTGAAAGATACGAACGTACTGTAGGTCTGTAAGTGACGCCAACTGTGAACTTTCCAGTGTGGCAAGGGGCCTATACTGCCTTCTGTAAGAGTGCCTCTTCATATTGTTTTAACCTATTTTTTTAACAACCCTTTACAACTTGGTTTCAACTCATTAGTGTTAACTTGTGTTTTGAATGTTGTATAAGGGAATCAATCACACATCTGAACATGACCCACCTGTACTGTAAAAACATCCTCTGTTTGAACCTATAACAAATGAAAGGTGTATTTTGTTGTAATTACACAATGCTGTAATTTATGTTTAAATGATGCATTATGCTCAAAGGGGAGTATTTTGCTAACTACAGTATATGTTCCACTTCAAAAGTTGTGCTGGCCCAGATCATTGAGACATCCCTGTGACTGGAATTTGCCTACAAGTTTGCCattcaaatcaatgcatggcTGTGCGAAGATTCAAGTCACGAAGTTGTCTCAAGACAAGAAATGATCAGATGTCTCTATAGAAAAACTTTACTAACCACTAACAATGAGATTTTACTCATTGTTTTATTACAACATTTGTCATTTATTTACCGTTCCTTCTTTATGATTTGTATAGTTGCAGTTGTACAGGTATATTGTATAGATGTATATTTATTAATAAACGGAAGACATTCTTAA
>XM_036974561.1
AGAAAAGTGTGACAccactggagttgcccatccccgCTCTACACTATTTCACTGTTTGTTACATGAAATATTTGCTTTGTGGATTTCAcatggacagatgttgctctccggctTTGGGATGCAACAAATAGGTTTGTGGGGAACGTGAATGCTGACAGTGTCATTCACCACAAGTTGTCCCACTCTATCAGAAGCCGCTTCCTGCGCTTCGTCCCGCTGGACTGGAACCCCAGTGGCTGGGTGGGACTCAGAGTGGAGGTGTACGGCTGTGCCTACAAGTCAGACGTGGCAGACTTTGATGGCAGAAGCTCCCTGCTCTACCGGTTTAACCAGAAGTCCATGAGCACGGTGAAGGATGTGATCTCGCTGCGCTTCAAGAGCCACCAGGCTGAGGGGGTGCTGCTCCACGGAGAGGGTCAGAGGGGCGACTACATCACTCTGGAGCTGCACCGGGGCAGGCTGGCCCTCTATCTCAACCTGGATGACACCCGGCTGCGGTTCAGCAGTGGTCGTGTTGCTGTCACTTTGGGCAGTCTTCTGGATGACCAGCACTGGCACTCTGTCCTCATCGAGCGCTTCAACAAGCAGGTCAACCTCACCATGGACACCCACACACAGCACTTCAGGACCAAGGGGGAAGGAGACTCTCTGGAGGTGGACTATGAGCTCAGCTTCGGAGGCATCCCACTGCCAGGTAAACCTGGTACCTTCCTGAGGAAGAACTTCCATGGCTGCATCGAGAACCTCTACTACAACGGGATCAACATCATCGACCTAGCCAAGCGACGCAAACCTCAGATCTACAGTGTGGGCAACGTGACCTTCTCGTGCTCGGAGCCCCAGCTGGTGTCCACCACTTTCCTGAGCTCCAGCAGCAGCTTCCTGTCGCTCCCGGCCACGCCGTCTGCTTCAGCGGGCTTCGCGGTGCGTTTCCAGTTCAGAACATGGAACCCAGAAGGGCTACTGCTCTCCACCCAGCTGGCCCTGGAGCCCCAGCGACTGGACCTGCAGATAAGCAACAGCCGGCTGCGCTTGACCCATCACACGTCAGCCCAGCAGAAAGAAGAGGTCTCCACCGGTCACAGAGTGAACGATGGACTGTGGCACTCTGTGAGTCTCAGCTCTCAAGGTCTTCAAGTCACCACGACCCTGGACAATGAGCCGTCCTCAACCATCGAGCTGGGGGACCACATGGAGGCAGGAAACAGCCTCTACTTCGGAGGTTGTCCATCTCTGAACATCTTAGGCTGTAAGAACCCCACGTTGGCGTTCCAGGGGTGCATGCGTCTCATCTCCATCAACAGCCAGCCCATGGACCTGAACCGGGTGCAACAAGGACGGCTGGGAAACTACAAGGAGCTGCAGTTTGACACATGTGGCATCCATGACAGATGTCTGCCCAACTTCTGTGAACATGGAGGGCAGTGTTCCCAGTCCTGGAACACCTTCTACTGTGACTGCTCTGGAACAGGATACACTGGAGCCACATGCCACAACTCCATCTATGAGGCATCATGTGAGGCCTAcaggctgactggcggctcctcaGGCTTCTTCTCTGTTGATCCAGACGGCAGTGGACCTCTGGGGCCGACACAGGTCTACTGCAACATGACAGAAGACAAGGTGTGGACAGTGGTGACCCACAACAGCACAGATCCAGTCAGGGTCCAGGGTTCTACTCTCCAAAAGCCCTACGTTATGAAGTTCAACTACAGCGCCTCACCTGAACAACTGATGGCCCTTGTGGCGGGGTCAGAGCAGTGTCGACAGGAAGTGATGTACGGCTGCAGGAAGTCCCGCCTCTTCAACACTAGAGATGGTACCCCATTGTCCTGGTGGGTGGACCAGGGTGGAGAGAGACGGACTTACTGGGGAGGCTTCCTACCGGGGGTTCAGCAGTGCTCCTGCAGCCTGGAGGAAAACTGCATGGATATGAACTACTTCTGCAACTGTGATGCCGACACAGACTCATGGGCTAATGACACAGGAGTCCTCTCCTACAAAGAGCACTTACCAGTGAGTGAGATCGTGATTGGAGACACCAACAGAACAGGCTCTGAGGCACTCTACAGAATCGGCCCACTGCGTTGTTATGGTGACAAGTCTGTGTGGAATGCGGCGTCCTTCTACCAGGAGTCATCCTACCTGCACTTCCCGACCCTCCAGGCAGAGCTCAGTGCTGACATCTCCTTCTACTTCAAGACCAGCGTCCCATCAGGAGTCTTTCTAGAGAACCTGGGCCTCAAGCACTTCATCAGGCTAGAGCTCAGCTCTCCCTCTGTGGTGACGTTCTCCTTTGATGTGGGAAACGGGCCAGTGGTCTTGGCCGTTAAGTCCCACGTGCCCCTGAATGACAGGCAGTGGCACTATCTGAGAGCAGAGCGCAGTGTGAAGGAGGCTTCTCTGCACGTGGACCAGCTGCCCCTGCGCTTCCTGGAAGCCCCGTCTGACAGACACCTCCGCCTCCGGCTCAACAGCCAGCTGTTTGTGGGGGGAACAGCGGCCAGGCAGAGTGGCTTCCTGGGATGCATCAGAACTCTGACTATAAACAGTGTGACCTTTAACCTGGAGGAGCGGGCTAAGATGACCCCGGGGGTAAGCGTTGGCTGCCCCGGCCACTGCAGCGGCTCCAGCAGTCTCTGCCACAACAGAGGGAGATGCATTGAGAAGAACAGTGGCTACGTCTGTGACTGCTCCCAGTCTGCTTACGGAGGACCCTCCTGCAAGGAAGAGGTGTCTGTTTCATTTGACAGAGAGTCGTCTGTGACCTACACCTTCCAGGAGCCTTTCTCTGTGATGCAGAACAGGAGCTCCAAGACCTCCAGTGACTACAGAGAGAGCAGCAGGGCCAGAGAGAACATAGCTTTCAGCTTCATGACCACACAAAGCCCTGCCATGCTGCTCACTGTCAACACCTTCAGCCAGCAGTACATAGCAGTCATCCTGGCACGCAACGGGAGTCTCCAGATCTGGTACAGTATCCATGTGGACAGGAAGCCAGATGTgttcagccccagccccagcagcCTGGCAGATAGACGCCTCCACCGTATCAGAATCCACCGTCAGGGGAAAGATGTCTACCTACAGATTGACAAGGACATGAACCTAAAGTACAGCCTGTCATCAGACGCAGAGTTAATCTCCATCAAATCGCTGACTTTGGGGAAAGTCACAGGAGTGGATGCTGTGGATGAGGAAGTGATGCGGGCAGGATCTAAGGGCTTCATTGGCTGTCTGTCATCAGTCCAGTTTAATCACATGGCTCCACTGAAGGCAGTGCTACTAAATCGTGGCAGCTCATTGGTCACTGTCCGGGGTCACTTGGTGGAGTCTAACTGTGGGACGTTGGCTGACTTGACAATATTGCACTCTCAATCAGATCATTCAGAGACAGTCAGCAGAGGCAAGGGGCCATTAAGGAAGGCTTCAAAAAACAACTCAGTGGTAATTGGAGGAGTAGTGTCAGCGGTGGTCTTCATCACTCTGTGTGTGGTGGCGGTGATGACCCGTTTCCTGTACCAACACCGGGAAGCCCAGAGAGATGCCAGCATCAAGGAGAAGGAGCACCGACACGACCTGGAAACAGCCTACAGGAGAGAAACTGCGTACCAGGCAGAATCAGCCTACCGAACAGAGCTCCACCTCCACCACAGCTCCACCCTCAGGGACAACAGGGAGTACTACATCTGAACACCAGTGTTCCAGTACCCTTGGTCATCAGGGAAGACCTGTTCTCTGTTAGTGGATTTGGAAGTGGAGATGTTGCTGCAGAATCATGGACAACATTCCGGACAAACAAAAGAACCCAGAGCCCAAGCCCAATACCCTTTCACAGGGATTATGCCAGGGCCAATGTCTGATTGTTACAAAACATGTAGGTAGTGGACAGCGAGTTTAGCCAATTTGTAGGGCTGTAAGTGTATTATGTGGTTGGTGGAACTGTTAAACAATATGGAGTGAATATGCAGGTGTGATTGTGAACCATTTCTCAACCAGCAGAAGTAAGAACTGAGATAAAGAAGGAAGGGAAACATAAGTGAATCTCACCTGCCACACCTACTGAATGTGTACAAATTTCCGAAGACATCATTATTCTTGTAACCCCCAATATTCTTCAAGATTTCCCACGGAGTTCTGTGGAGCGTCCTAAATTACATGTGAAAGATACGAACGTACTGTAGGTCTGTAAGTGACGCCAACTGTGAACTTTCCAGTGTGGCAAGGGGCCTATACTGCCTTCTGTAAGAGTGCCTCTTCATATTGTTTTAACCTATTTTTTTAACAACCCTTTACAACTTGGTTTCAACTCATTAGTGTTAACTTGTGTTTTGAATGTTGTATAAGGGAATCAATCACACATCTGAACATGACCCACCTGTACTGTAAAAACATCCTCTGTTTGAACCTATAACAAATGAAAGGTGTATTTTGTTGTAATTACACAATGCTGTAATTTATGTTTAAATGATGCATTATGCTCAAAGGGGAGTATTTTGCTAACTACAGTATATGTTCCACTTCAAAAGTTGTGCTGGCCCAGATCATTGAGACATCCCTGTGACTGGAATTTGCCTACAAGTTTGCCattcaaatcaatgcatggcTGTGCGAAGATTCAAGTCACGAAGTTGTCTCAAGACAAGAAATGATCAGATGTCTCTATAGAAAAACTTTACTAACCACTAACAATGAGATTTTACTCATTGTTTTATTACAACATTTGTCATTTATTTACCGTTCCTTCTTTATGATTTGTATAGTTGCAGTTGTACAGGTATATTGTATAGATGTATATTTATTAATAAACGGAAGACATTCTTAA

Function

NR:

description
contactin-associated protein-like 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597311.2 False 5232 mRNA 0.52 24 52380931 52442609
XM_036974561.1 True 4828 mRNA 0.51 22 52405572 52442609

Neighbor

gene id symbol gene type direction distance location
LOC110520174 LOC106586278 coding upstream 613945 51759256 ~ 51766986 (+)
LOC110520171 LOC106586099 coding upstream 756345 51621354 ~ 51624586 (+)
LOC110520169 il1rl1 coding upstream 798364 51573980 ~ 51582567 (+)
LOC110520168 LOC106586274 coding upstream 848297 51504521 ~ 51532634 (+)
pdxka LOC106586273 coding upstream 880842 51490352 ~ 51500089 (+)
LOC110520178 LOC106582420 coding downstream 66166 52508775 ~ 52567291 (+)
LOC110520179 arl4c coding downstream 142402 52585011 ~ 52587048 (+)
LOC110520180 LOC106586330 coding downstream 265762 52708371 ~ 52760376 (+)
LOC110520185 NA coding downstream 432319 52874928 ~ 52942773 (+)
acvr2aa LOC106586327 coding downstream 682047 53124656 ~ 53172428 (+)
G270862 NA non-coding upstream 444533 51932868 ~ 51936398 (+)
G270795 NA non-coding upstream 527875 51852747 ~ 51853056 (+)
G270484 NA non-coding upstream 609314 51770610 ~ 51771617 (+)
G270486 NA non-coding upstream 610801 51769469 ~ 51770130 (+)
G270483 NA non-coding upstream 611863 51768123 ~ 51769068 (+)
G271855 NA non-coding downstream 163665 52606274 ~ 52606501 (+)
G271858 NA non-coding downstream 165213 52607822 ~ 52608280 (+)
G271878 NA non-coding downstream 178162 52620771 ~ 52621041 (+)
G271885 NA non-coding downstream 182493 52625102 ~ 52625348 (+)
G271900 LOC100136012 non-coding downstream 192486 52635095 ~ 52635354 (+)
G269291 rap2a other upstream 1480654 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 1776115 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 2197905 50162278 ~ 50184327 (+)
G267529 NA other upstream 2525429 49836617 ~ 49855502 (+)
LOC110520187 LOC106586325 other downstream 778818 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 848721 53291284 ~ 53339392 (+)
G272965 NA other downstream 1206216 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 1214852 53657461 ~ 53658683 (+)

Expression


Co-expression Network