G250029


Basic Information

Item Value
gene id G250029
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34968858 ~ 34982923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU285181
GTTAGTCAACTGACAGGCCAGTACAACATTGGTGCCCGAAGACCTATAAAAGAATGCACAACTTGACGTACCTTGACACGAATGGGgaaatttccacgacatttgGCGCAGAGGATGGGATGTGAATCTTCACTTGGTGACCGTTCCTGACGATCTAGGTAAATAAATCGTGCACGAGGGATCCCTCAAACGTGGGATCTTAGGGAAACCACACTTCGGGAACAAAGCAGATGGACCAACCTTTGATCTGAGAGGAagcgagccgagtggataccacatctcgaacagagtttttttaaagaaaaagGTGATCATGAAAAGTGACATCAGATGGTATCTTAATGCATGGAAGAGATAATTGGACCGAATAGCGTGTGTacctcaaaaccccctctaacTGACTGAAGAAGAGTGACAAAGGCGTTGAATAAGGCCCTTCCAAGCCACTTCTACCGAGAGAAAGGAACCAAGCCAGAAATCGGTGTACAGTATCAGATCTAAACTAttaactgcttttctttcatgctTCTCTCAGTCCACATGGAGTGATCATGGAGAGAGATCTGTTCTAACTTTTTCTTATGGTACTGGTATATTGGTTGACGAATGGACAAGACATGAGtggtaaagatgagacattgaaattggAACATTATCATGGGCCATCCATTTTGAACTGTAAAGCTATCTGAAGAAGAACGAAAAGGACGCCAGAAGAATCAGTGCCTGATAAAATTGCTTTATACTTTTGTGGTATCAGGTTGATTGTAGAGGTCTACACCATGTAAAATTATAGTCATTTAGATTacgaatgcattgagatactgatctgtattaTAATCATGATTAAAAAAGTTAATGGTAGAATTATGAGATAATTATACTGAATGAATGTAAAATCTGCTAATACTGAATTGAGGTTTTTACTTTGAGTGATAAGACCAATTTGAATTACTGAGGAATGTCATTCTAAGTTTTGGTTGGATAAATAGTTGGGTTGTTAATTATGATTTGGAAAATGAATGATTTTACATTTGAAGAACTACATGGAGTACTGTCTGGTGTGGTCCCACCCTCTCAGACCCCAGAGCTTGAGCAGGGTATTTTAGTTTTTGAAGGAGCGGGagtgtatatattttatattttgtagTGTGTGAATGAATGTTAATTTTCCCTTTCCCGTATGGTAATTATTTTACCCCTATCCAGTACATATTCTGAGTATACTGCCCTACGAAGCAAACAGGCAGTAATTGCTCATTTGGTCGAAAATGACTTAGTTATTTTTGCTACATTAAATGCATGCTTAATCATGTGGGCAcgtatcctgcctctattgtattgtgttctggagaaaatgggggtcatgttagcagtaactgcataAAGTTATTGTGAACCAAGGCAAATAAAAgccatttttctcagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285181 True 1429 lncRNA 0.39 3 34968858 34982923

Neighbor

gene id symbol gene type direction distance location
LOC110504041 LOC106605016 coding upstream 292883 34671886 ~ 34707455 (+)
LOC118944510 NA coding upstream 302004 34665596 ~ 34666854 (+)
LOC118964383 NA coding upstream 384367 34584351 ~ 34584491 (+)
LOC110519336 LOC106584151 coding upstream 497263 34458503 ~ 34471595 (+)
cnih4 cnih4 coding upstream 555364 34401705 ~ 34413494 (+)
LOC110519409 scmh1 coding downstream 8100 34991023 ~ 35038369 (+)
ctps1b LOC106584221 coding downstream 136783 35119706 ~ 35153002 (+)
rab42b rab42 coding downstream 170623 35153546 ~ 35173463 (+)
LOC110519579 gmeb1 coding downstream 220724 35203647 ~ 35221874 (+)
ptprub ptpru coding downstream 275172 35258095 ~ 35611096 (+)
G250016 NA non-coding upstream 53511 34915098 ~ 34915347 (+)
G250009 NA non-coding upstream 59563 34908810 ~ 34909295 (+)
G249988 NA non-coding upstream 73394 34894997 ~ 34895464 (+)
G249953 NA non-coding upstream 87592 34880935 ~ 34881266 (+)
G249778 NA non-coding upstream 238263 34729824 ~ 34730595 (+)
G250150 NA non-coding downstream 63223 35046146 ~ 35046501 (+)
G250158 NA non-coding downstream 76603 35059526 ~ 35059740 (+)
G250159 NA non-coding downstream 76876 35059799 ~ 35060015 (+)
G250160 NA non-coding downstream 77332 35060255 ~ 35060482 (+)
G250398 NA non-coding downstream 278287 35261210 ~ 35261419 (+)
G249323 NA other upstream 548246 34419890 ~ 34420612 (+)
G249245 NA other upstream 665951 34302572 ~ 34302907 (+)
G248795 NA other upstream 955801 34006158 ~ 34013057 (+)
G248794 NA other upstream 991023 33974476 ~ 33977835 (+)
G248750 LOC106583978 other upstream 1133583 33828220 ~ 33835275 (+)
G251773 NA other downstream 1528651 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 1640687 36623610 ~ 36627542 (+)
G253299 NA other downstream 2744025 37726948 ~ 37727338 (+)

Expression


Co-expression Network