ctps1b (LOC106584221)


Basic Information

Item Value
gene id ctps1b
gene name LOC106584221
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35119706 ~ 35153002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596594.2
CAAATCTATTTActtccttttttgttgttgctgttggcAAGTGTTCATCGGTTGTAGTTCGAACGGTACATTTACTCGTGgcagtatgttactgtactcATGGTATTACTCACAGTTCCAATTTGGTTAATGTCAACAGAGTTACCCAGTAATCATTCTTCCTTCGATAAACGCGTGTGGACCCTTGAACGCAGCCTTTTTTCCCTCTTTGTCGTGCCTTCTCCAAGCAAGTACCAATTTCTACCGCAAACACAACAGTGACGATGAAGAGGTAGTGACGTTGCTCAAGTCCTGCTCATGAGTGTTTACTGTGCAGTGCGCAGTAAATTGTACACCATTTGGCTGATCTGCATGCAACGTCAACCCTTTTCACTTTGTAATATGTAAATCATTGCATTCAATTCTGCCTTGTTTTTGCGTCTGCGAAGTCTTCTTTTGTGTCAGTTTACGCCACACGTGTACCAGCACAGAAGAACGTGCGCAGGTTTCACATGCCACTATGAAGTACATTTTGGTCACTGGAGGTGTCATATCCGGAATTGGCAAGGGCATCATTGCCAGTAGTGTGGGCTTAATCCTGAAGTCCTGTGGTCTGCATGTGACTGCCATCAAAATCGACCCCTACATCAACATTGATGCTGGCACCTTCTCACCTTATGAACATGGTGAAGTGTTTGTGTTGGACGATGGAGGTGAGGTGGACCTGGATTTAGGAAACTACGAGCGCTTCCTGGACATCAGGTTAACCAGGGACAACAACCTGACCACGGGCAAAATCTACCAGTCTGTCATCaacaaggagaggaggggagactaCTTGGGCAAAACTGTACAGGTGGTGCCACACATCACAGATGCAATTCAGGAGTGGGTGGTGAAGCAGGCCAAGATCTCAGTGGATGACGATGGGGTGGAGCCACAAGTCTGTGTTATAGAGTTGGGAGGCACTGTGGGAGACATTGAGAGCATGCCATTTATCGAGGCCTTCAGACAGTTCCAGTTCAAGGTGAAGAGGGATAACTTCTGCAACATTCATGTCAGCTTAGTCCCACAGCCCAGTGCCACAGGAGAACAGAAGACGAAACCCACTCAGAACAGTGTCCGAGAGCTCCGTGGACTAGGACTCTCCCCAGATCTGATCATGTGCCGCTGTGCGACACCTCTGGAGAACGCTGTCAAAGAAAAGATCTCCATGTTTTGTCACGTAGAGCCCACGCAGGTGATCTGCGTGGCAGATGTGTCGTCCATCTACAGAGTACCCCTACTACTGGAGGAGCAGGGGGTGGTGGGCTATATCTGCCAGCGGCTTGACCTGCCTATTGAGATGAGGGCCAGGAAGATGCTCACCAAGTGGAAGGAGATGTCCGACAGGTCTGACCGACTCCTGGAACATGTGTCCATCGCCCTGGTAGGGAAGTACACAAAGTTCTCTGACTCATATGCCTCTGTCATCAAGGCCCTGGAGCACTCAGCCCTCGCCATCAACCACAAACTAGAGATCAAGTTCATCGACTCTGCAGACCTAGAGCCAAATACACTGCAGGAGGAGCCTGTGAAGTACCACGAGGCCTGGCAGAAACTCTGCAGTGCTGATGGTGTCTTGGTACCTGGAGGCTTCGGTGTAcgggggacagaggggaaaatCCAGGCTATCAGCTGGGCAAGGAAAAAGAAAAAGCCATTTTTAGGGGTATGTTTGGGCATGCAGTTGGCAGTGTGTGAATTTGCCCGCAATGTTCTTGGCTGGCAAGaTGCCAACTCTACTGAATTCCATCCAGAATCTAAACACCCAGTGGTGATTGACATGCCAGAACACAACCCTGGGCAGATGGGTGGGACTATGAGGTTGGGGAAGAGGCGGACCATCTTCAAATCCAACACCAGCATTTTGAGAAAGCTGTATGGTGATGCTGAATATGTTGACGAGAGGCATCGTCACCGTTTTGAGGTGAACCCTGAGCTGAAGCACCACTTTGAGGAGAGGGGCTTCCATTTTGTCGGCCAAgacgtagagggagagaggatggaggtcATTGAGCTGGATGATCATGCCTATTTTGTTGGAGTGCAGTACCACCCAGAGTTCACTTCTCGTCCCATCAAGCCCTCACCCCCCTACTTTGGCCTCCTGCTGGCTGCAGCAGGGAAACTCCAGAGCTACCTACAGAAAGGTTGTCGCCTCTCACCACGagacacatacagtgaCCGCAGCGACAGCAGCTCTCCAGACTCTGAGATCGCTGAACTGAAATTCTAGGAGTTACATGCACCTGTTACTCTGTTGATGCTGGTACTAATGTTATAGTTCACCTCATCTTTTCAAACTCAATACACAGCCTCCGCTCATCTACCTGacaataaatacttttttctgtCACCCAACGGAAGGTCTCGTTACTGAGAAAAGTAGCTCTCTGAAATGATGCAGGAAACTAAAATGGCTAGATTTTTAAACAATTGAATTGAACAATTGAATGCAACATATCGGCATTACAATGCCCCCCTTTTTTAAATGGTATTCTTCAAAGTGAAACTTTGTCCAAGAACACTAAGAAACAACAGTGTGAATACAGTTTGATAATATGTAAATGTAGTAAGAGATGTATGTGTTTGTCAATTTCCCTCAGAAAAAAACACCCAGCGAGGTGTTATTGAATAAAACAGTGATGCACTAATGAATGGAAGATGAAAATAAAAAGTTGGTGTGAATTTGA

Function

NR:

description
PREDICTED: CTP synthase 1-like isoform X1

GO: NA

KEGG:

id description
K01937 pyrG, CTPS; CTP synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596594.2 True 2714 mRNA 0.47 18 35119706 35153002

Neighbor

gene id symbol gene type direction distance location
LOC110519409 scmh1 coding upstream 81337 34991023 ~ 35038369 (+)
LOC110504041 LOC106605016 coding upstream 443731 34671886 ~ 34707455 (+)
LOC118944510 NA coding upstream 452852 34665596 ~ 34666854 (+)
LOC118964383 NA coding upstream 535215 34584351 ~ 34584491 (+)
LOC110519336 LOC106584151 coding upstream 648111 34458503 ~ 34471595 (+)
rab42b rab42 coding downstream 544 35153546 ~ 35173463 (+)
LOC110519579 gmeb1 coding downstream 50645 35203647 ~ 35221874 (+)
ptprub ptpru coding downstream 105093 35258095 ~ 35611096 (+)
serinc2l LOC106584332 coding downstream 972325 36125327 ~ 36144587 (+)
LOC110519702 LOC106584341 coding downstream 1019191 36172193 ~ 36262289 (+)
G250160 NA non-coding upstream 59224 35060255 ~ 35060482 (+)
G250159 NA non-coding upstream 59691 35059799 ~ 35060015 (+)
G250158 NA non-coding upstream 59966 35059526 ~ 35059740 (+)
G250150 NA non-coding upstream 73205 35046146 ~ 35046501 (+)
G250029 NA non-coding upstream 136783 34968858 ~ 34982923 (+)
G250398 NA non-coding downstream 108208 35261210 ~ 35261419 (+)
G250401 NA non-coding downstream 111406 35264408 ~ 35264638 (+)
G250404 NA non-coding downstream 113132 35266134 ~ 35266436 (+)
G250405 LOC106584099 non-coding downstream 114662 35267664 ~ 35267944 (+)
G250408 NA non-coding downstream 118891 35271893 ~ 35272185 (+)
G249323 NA other upstream 699094 34419890 ~ 34420612 (+)
G249245 NA other upstream 816799 34302572 ~ 34302907 (+)
G248795 NA other upstream 1106649 34006158 ~ 34013057 (+)
G248794 NA other upstream 1141871 33974476 ~ 33977835 (+)
G248750 LOC106583978 other upstream 1284431 33828220 ~ 33835275 (+)
G251773 NA other downstream 1358572 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 1470608 36623610 ~ 36627542 (+)
G253299 NA other downstream 2573946 37726948 ~ 37727338 (+)

Expression


Co-expression Network