G250405 (LOC106584099)


Basic Information

Item Value
gene id G250405
gene name LOC106584099
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35267664 ~ 35267944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU285607
GTCcctactgtgagacgcctaagacagcgctacagggagacaggatggacagctgatcgtcctcacagtggcagaccacgtgtaacatcacctgcacaggatcggtacatccgaacatcacacctgtgggacaggtacaggatggcaacaacaactgcctgagttacaccaggaacgcacaatccctccatcagttctcagactgtccgcaataggctgagagaggctggactgagggcttgtagaacGGTTggctggtgaggacctgccttacatcaccg

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285607 True 281 lncRNA 0.55 1 35267664 35267944

Neighbor

gene id symbol gene type direction distance location
LOC110519579 gmeb1 coding upstream 45790 35203647 ~ 35221874 (+)
rab42b rab42 coding upstream 97400 35153546 ~ 35173463 (+)
ctps1b LOC106584221 coding upstream 114662 35119706 ~ 35153002 (+)
LOC110519409 scmh1 coding upstream 229295 34991023 ~ 35038369 (+)
LOC110504041 LOC106605016 coding upstream 591689 34671886 ~ 34707455 (+)
serinc2l LOC106584332 coding downstream 857383 36125327 ~ 36144587 (+)
LOC110519702 LOC106584341 coding downstream 904249 36172193 ~ 36262289 (+)
LOC110519762 LOC106584688 coding downstream 1025880 36293824 ~ 36301569 (+)
phactr4b LOC106584362 coding downstream 1049369 36317313 ~ 36368316 (+)
rcc1 rcc1 coding downstream 1113526 36381470 ~ 36387216 (+)
G250404 NA non-coding upstream 1228 35266134 ~ 35266436 (+)
G250401 NA non-coding upstream 3026 35264408 ~ 35264638 (+)
G250398 NA non-coding upstream 6245 35261210 ~ 35261419 (+)
G250160 NA non-coding upstream 207182 35060255 ~ 35060482 (+)
G250159 NA non-coding upstream 207649 35059799 ~ 35060015 (+)
G250408 NA non-coding downstream 3949 35271893 ~ 35272185 (+)
G250409 NA non-coding downstream 5251 35273195 ~ 35273689 (+)
G250410 NA non-coding downstream 5860 35273804 ~ 35274009 (+)
G250425 NA non-coding downstream 24189 35292133 ~ 35292371 (+)
G250428 NA non-coding downstream 28208 35296152 ~ 35296376 (+)
G249323 NA other upstream 847052 34419890 ~ 34420612 (+)
G249245 NA other upstream 964757 34302572 ~ 34302907 (+)
G248795 NA other upstream 1254607 34006158 ~ 34013057 (+)
G251773 NA other downstream 1243630 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 1355666 36623610 ~ 36627542 (+)
G253299 NA other downstream 2459004 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 2824378 38092322 ~ 38092734 (+)
G254204 NA other downstream 3173222 38441166 ~ 38441734 (+)

Expression


Co-expression Network