G261386 (LOC106581475)


Basic Information

Item Value
gene id G261386
gene name LOC106581475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43989838 ~ 44031605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU297365
ggagcgagacaggatgtcccagatgtgctcaattagattcaggtctggggaacgggcgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacaatccagccacatgaggtctagcattgtcttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcatctcggtacctaattggagtcaggctacctctggcgtgcacatggagggctgtgcggcccccccaaagaaatgccaccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297365 True 333 lncRNA 0.57 2 43989838 44031605

Neighbor

gene id symbol gene type direction distance location
LOC118956122 NA coding upstream 2880 43943124 ~ 43986958 (+)
LOC110519997 lct coding upstream 94190 43876264 ~ 43895648 (+)
LOC110519995 LOC106586118 coding upstream 114018 43857089 ~ 43875820 (+)
LOC110519994 LOC100380648 coding upstream 144209 43830961 ~ 43845629 (+)
LOC110519984 LOC106586113 coding upstream 475951 43169785 ~ 43513887 (+)
LOC110504116 LOC106586120 coding downstream 44217 44075822 ~ 44208107 (+)
LOC110520002 LOC106586124 coding downstream 438566 44470171 ~ 44475272 (+)
LOC118964364 NA coding downstream 802906 44834511 ~ 44834565 (+)
cd18 cd18 coding downstream 847055 44878660 ~ 44903676 (+)
LOC110520005 LOC106586127 coding downstream 872429 44904034 ~ 44930884 (+)
G261383 NA non-coding upstream 7700 43981673 ~ 43982138 (+)
G261382 NA non-coding upstream 8258 43981255 ~ 43981580 (+)
G261381 NA non-coding upstream 8762 43980813 ~ 43981076 (+)
G261380 NA non-coding upstream 9117 43980445 ~ 43980721 (+)
G261338 NA non-coding upstream 36689 43921285 ~ 43953149 (+)
G261725 NA non-coding downstream 194348 44225953 ~ 44226235 (+)
G261738 NA non-coding downstream 206653 44238258 ~ 44239058 (+)
G261739 NA non-coding downstream 207572 44239177 ~ 44239503 (+)
G261860 NA non-coding downstream 286882 44318487 ~ 44318760 (+)
LOC110519969 LOC106586020 other upstream 3537658 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 4321750 39658753 ~ 39668297 (+)
G254816 NA other upstream 5145282 38843510 ~ 38844556 (+)
G254445 NA other upstream 5388972 38600487 ~ 38600866 (+)
G254204 NA other upstream 5548104 38441166 ~ 38441734 (+)
G261749 NA other downstream 220464 44252069 ~ 44252551 (+)
G262037 NA other downstream 488814 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 1807316 45838921 ~ 45839480 (+)
G263710 NA other downstream 1902514 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 2043879 46075484 ~ 46079425 (+)

Expression


Co-expression Network