XLOC_022110 (syn2a)


Basic Information

Item Value
gene id XLOC_022110
gene name syn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4751959 ~ 4775446 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043684
GAGGCAGAGAGGGGAGGAAACACTGCGACGCAAGGAGGGATCCCAGCATCTCACTTCCATGGCTGTCTTTCCGCTGAAGTAGATCACCACATCAGTTTCCAGATCAGCACTGCTCCTCTAGTCTGCCATCATGAACTACCTGCGCCGGCGTCTGTCCGACAGCACCTTCATCTCCAACCTGCCTAATGGCTACATGTCGGACCTGCAGAAACCAGATCCTCCTCAGCCTCCCCCTCCAGGACCAGCCCCAGTGCCAGCGCCAGCCTCAGGACCAGCTCCGGTGTCCCCGCGCCAGGAGAGGAAACCCATCCAGCCCCAGCCAGGCTTAGGGACGGGCTTTTTCAGCTCCATCACGAATGTTGTCAAGCAGACGGCTGCCTCGGCCGGGCTGGTGGAGCAAACCTCCGTCCCTGCATCATCCAAAAGAATCAAGATCCTGCTGGTTATTGACGAGCCCCAGCACGACTGGGCAAAACTCTTCAGGGGGAAAAAACTGAATGGAGATTATGATATTAAAGTCGAACAGGCTGAGTTTGGCGACATCAGTATTGTGGCTCATGCAAATGGATCATGTAACGTGGCTGTGCAGGTTTTGCAGAATGAAAACAAGGTTCTGAGGTCATTTAAGCCTGACTTTGTTCTGATCCGGCAACATGCATTCAGCATGACAGAGAATGAGGATTTCCGTAACTTAATCATCGGCCTCCAGTACGCTGGTATTCCCAGCATCAACTCTCTGGAGTCTGTCTACAACCTCTGTGACAAACCCTGGGCATTTGCATGTCTGATCAATACATACAAGAAACTTGGCCAGGAGAAATTCCCATTGATTGAACAGACGTTCTATCCCAACTATAAAGAAATGGTGACCATGCCAGCATTTCCCGTTGTCGTGAAAATTGGACACGCTCACTCTGGTGTGGGGAAGGTGAAAGTGGAGAATCACACTAAGTTTCAGGACATAGCTAGTGTGGTGGCCATTACTCAGACATACAGCACATGCGAGCCTTTCATCGATCCCAAATATGATATCAGGATTCAGAAAATCGGAAACGATTACAAAGCGTACATGAGGACGTCGGTCTCAGGTAATTGGAAGTCCAACACGGGCACTGCCATGGTGGAACAGGTGGCGATGACAGACAGGTACAAGCTTTGGGTGGACACCTGCTGTGAAATATTTGGAGGACTTGAAATTTGTGCTGTTAAAGCTATTAATGGAAAAGATGGGAAAGACTACATTACTGAGGTAATGGGTTCATCCATGCCATTAATGGGGGAACATCAGGCTCAAGACCAGCAGCTAATAGCAGACATGGTCATAGCCAAAATGAATCACGTCATGGCACAAAATCCCAAAAGACCAACTGCTATTCAACCAAAACAGaTTACGGTAGAGAACAATACTTTGGTCGAAGTAAAGAACGCTCCACCACAGAAAGCTCCTCCTCAAGGCTGTTTGCAGTACATCCTTGACTGTAACGGAGTTGCAGTGGGACCAAAATTGGTGCAGGCAAACTAACATAGCCATGGATGCTTATAGCATTTACACTCCTGACAGGCTGCGTTCAAGCCTGGGGTTACCTGAGGTGCGAGGGAACAAATAAAAGTTTGGGCCTGACCTGTATTTCAGTCTGTACTGTGTAACTTTCACTGTTGTGAGCTTGTGGTGGTTGCTTTTGTTTCTATGTGAAGCGGTCGTCTCTTCAGGGTTGTTGTGTTTGGTGATACAGCAGATTGTGCCTAATGTTCAGTGCCACCCTCCCATCTACTTTATATACGACTATTTTTTTGTTGTCTTATGTCTGTTTCTGTAAATGGTGTTCAAAGGGTTACAGTATAAGTGtggatgcatatatatatatatatgaaagtatGGAGATTATAAAACATATATGAACACTACTTTAATTGCATGATCAAACGTCGTGTGTCATTGTGTGTTGAATGGTGAGATGTGTATTTACTTTTGTGACTTCACTGTCGAAATAATAGATCCCATTCAAGCACTTCTGTTATTGTTAACGTGTTATACTGTAAAATGGTGAGATGTATTTGCTACTATGAATGAAAGCTATATTACAGGTCATCAATAATTCTTTTCTTGTTGACGATAATATTGCAAaattgcaaattaaataaatcatgagcaataaaataaaactgaacaaaCATTGA

Function

symbol description
syn2a Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion. Predicted to be located in synaptic vesicle. Predicted to be active in synaptic vesicle membrane. Is expressed in DEL; nervous system; spinal cord neural tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human SYN2 (synapsin II).

GO:

id name namespace
GO:0007269 neurotransmitter secretion biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-341 Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion. Predicted to be located in synaptic vesicle. Predicted to be active in synaptic vesicle membrane. Is expressed in DEL; nervous system; spinal cord neural tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human SYN2 (synapsin II).

Ensembl:

ensembl_id ENSDARG00000045945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043684 True 2178 mRNA 0.45 11 4751959 4775446

Neighbor

gene id symbol gene type direction distance location
XLOC_022109 cnbpa coding downstream 46706 4699144 ~ 4705253 (-)
XLOC_022108 zgc:171857 coding downstream 342291 4392147 ~ 4409668 (-)
XLOC_022107 aar2 coding downstream 526129 4216196 ~ 4225830 (-)
XLOC_022106 FQ323119.1 coding downstream 660950 4086493 ~ 4091009 (-)
XLOC_022105 slc9a8 coding downstream 732031 3949548 ~ 4019928 (-)
XLOC_022111 slc6a1a coding upstream 59001 4834447 ~ 4855122 (-)
XLOC_022112 atp6ap1a coding upstream 123792 4899238 ~ 4915118 (-)
XLOC_022113 taz coding upstream 140149 4915595 ~ 4925724 (-)
XLOC_022114 ngfa coding upstream 153996 4929442 ~ 4975517 (-)
XLOC_022115 kcna2b coding upstream 234518 5009964 ~ 5032587 (-)
XLOC_022102 NA non-coding downstream 1021353 3728090 ~ 3730606 (-)
XLOC_022098 NA non-coding downstream 1300580 3450998 ~ 3451379 (-)
XLOC_022096 AL954726.1 non-coding downstream 1695863 3055981 ~ 3056096 (-)
XLOC_022095 NA non-coding downstream 1759852 2960218 ~ 2992107 (-)
XLOC_022093 NA non-coding downstream 1907705 2842399 ~ 2844254 (-)
XLOC_022117 FO904870.1 non-coding upstream 344286 5119732 ~ 5126166 (-)
XLOC_022118 NA non-coding upstream 415331 5190777 ~ 5199754 (-)
XLOC_022119 CR936540.1 non-coding upstream 435575 5211021 ~ 5365345 (-)
XLOC_022120 dre-let-7a-5 non-coding upstream 655750 5431196 ~ 5431319 (-)
XLOC_022121 dre-let-7e non-coding upstream 655972 5431418 ~ 5431517 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_05830018_05845856 SYN2A coding CI01000021 null 5829305 ~ 5846136 (-)