XLOC_022121 (dre-let-7e)


Basic Information

Item Value
gene id XLOC_022121
gene name dre-let-7e
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5431418 ~ 5431517 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043708
GCTGTTCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGAGCCCTGCGCTCTCTCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAGGCGACAGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081975

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043708 True 100 miRNA 0.48 1 5431418 5431517

Neighbor

gene id symbol gene type direction distance location
XLOC_022120 dre-let-7a-5 coding downstream 99 5431196 ~ 5431319 (-)
XLOC_022119 CR936540.1 coding downstream 66073 5211021 ~ 5365345 (-)
XLOC_022118 NA coding downstream 231664 5190777 ~ 5199754 (-)
XLOC_022117 FO904870.1 coding downstream 305252 5119732 ~ 5126166 (-)
XLOC_022116 etv7 coding downstream 329571 5086317 ~ 5101847 (-)
XLOC_022122 tnnt2a coding upstream 221707 5653224 ~ 5685172 (-)
XLOC_022123 lad1 coding upstream 256455 5687972 ~ 5719453 (-)
XLOC_022124 tnni1a coding upstream 291573 5723090 ~ 5729484 (-)
XLOC_022125 phlda3 coding upstream 324925 5756442 ~ 5759242 (-)
XLOC_022126 csrp1a coding upstream 333997 5765514 ~ 5818992 (-)
XLOC_022102 NA non-coding downstream 1700812 3728090 ~ 3730606 (-)
XLOC_022127 NA non-coding upstream 882065 6313582 ~ 6324914 (-)
XLOC_022128 NA non-coding upstream 896714 6328231 ~ 6354179 (-)
XLOC_022129 BX323087.2 non-coding upstream 968322 6399839 ~ 6419850 (-)
XLOC_022141 NA non-coding upstream 1553155 6984672 ~ 6997683 (-)
XLOC_022144 NA non-coding upstream 1739349 7170866 ~ 7217574 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G60426 NA non-coding CI01000009 null 15288178 ~ 15288394 (-)