XLOC_022129 (BX323087.2)


Basic Information

Item Value
gene id XLOC_022129
gene name BX323087.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6399839 ~ 6419850 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043720
TTGCCATTGATTTATCAGAATCATAGTTCTGCTATGGATACATATTCTCATTTTAAATTGTCTTATTTAAGGGAGTAACCCTCTCAGAGCTCATGGAGGCTAAGAAGACCTTCAGTACATCAAAACTGGAAATTCAACCAGGTGAAGTGTGCAGATCTACAGAGAGACTGTGTGTTCAGAGAGTTCATGAGGACACCACAGACTCCAGTCCATCTCTGAAAACACTAGAACAACATTCTGAGGATCATCTTGATGAGCAAGGAAACTGGAAAAGAAGATCTGGACCCAATCCTGAAAGGTCTTCCTTTTGCATGTCTTCAGTAAAAGGAGCTTGTGGATTCACTCCTAGTCTGAAGAATCACAGGAGCTTAAAAGGTCCTATAAACACCTCCTTATCTGAGTGtgtaatattttataaacatcatcatcatcatcatcatcatcatagtaATATATTGTGTCTTTGTCTGTTCAGAgtctgaatggatggatgaaaatgacAACATTCTTTATGGTTGCTCTGGTGCATCTCTGGCACAGAAACTCATTGAAGACAGTGACCTGCCTGGCCTACTCACTGAGGTAACATTAGCAAATGTGTTTGAGTCTCAGGCATATGGCATATGCGTATGGGTTGTTGACATGATTTTGGATTTTCACtgtcacacaaaacaaaa
>TCONS_00043721
aataaacagtcaaacaaaacaaacaatcaaacagacagacagacaatcaatcaatcaatcaattaatcgatccaacaaacaaataatcaataagtcaaacaaacaaacaaaaataaagaaataaattaattaacaatcaatcaaactaaatcaataaatcaacgaataaacaattaaacaatcaatcaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaataaataaacaaaatattaaacaaacattcaaacaaacattcaaacaaacaaacaaaattaaacaaaatattaaacaaacaaacaaacaaacatttaaacaaacaatcaaacaaactaacaaacaaaataaaacaaaatattaaacaaacaaacatttaaacaaacaatcaaacaaacaaacaaacaaaataaaacaaaatattaaacaaacaaacatttaaacaaacaatcaaacaaacaaacaaacaaaataaaacaaaatattaaacaaacaaacatttaaacaaacaatcaaacaaacaaacaaacaaacaaaataaaacaaaatattaaacaaacaaacatttaaacaaacattcaaacaaacaaacaaaattaaacaaaatatttaacaaacaaacatttaacaaatgaacaaacaaacaaataataatcccATAATTGATGCATTCACATCACTATCAGTATAAGAtctaaatgataataatactgAAGATCTAAATAAATGAGCGTCACATCTTTATAGCATCTGCAGTTGTACAGTATCAGTTACTTTGTCAGTGGCACTTTTTTCTGTCCTGCTGCTATTGAAACTCCACccttctctcactctctctctttctctctctctctctcctctgcagtGTTTTCTCTGCTGCGGTCAGCACAAGTGTTCAGTGTCAGTCTGGACGATGCAGGACTGTCTGATCAGGACACACATGATCCCGGTAAGGGATGAAGATGCCGAATCTCAGAGGAAGGCCAAATCACGGCAGGCCAGACAGACTCGGAGAGCTACACAGGGAGTAACCCTCTCAGAGCTCATGGAGGCTAAGAAGACCTTCAGTACATCAAAACTGGAAATTCAACCAGGTGAAGTGTGCAGATCTACAGAGAGACTGTGTGTTCAGAGAGTTCATGAGGACACCACAGACTCCAGTCCATCTCTGAAAACACTAGAACAACATTCTGAGGATCATCTTGATGAGGTGATTATGACACAAAAACGCTGCAATTTACCACCGGAGAACAATAACAGATGCAAATAATGGGTTAGTCTGC
>TCONS_00044714
GGAGCATGTGAGGTGAGGATATCATTCCAGGCACTGATAGTGTTTTACTGCAGGCTCGGCCCAATAAATAAGTTTGAATAAACACAGGCTGTTCTTTGAGTACAGCGAGCACCACGTAGCCCAGCCGTGACCCTGAGACCTTCGGCCCCTATGTGCtGTTTTCTCTGCTGCGGTCAGCACAAGTGTTCAGTGTCAGTCTGGACGATGCAGGACTGTCTGATCAGGTACAGTATTGAGTCTAATCTCTGGTCTGCTTTAAACAGCTGCATGTGTCTGCTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117463

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043720 False 677 lncRNA 0.40 2 6399839 6403536
TCONS_00043721 False 1305 lncRNA 0.31 3 6403207 6410752
TCONS_00044714 True 279 lncRNA 0.49 2 6409743 6419850

Neighbor

gene id symbol gene type direction distance location
XLOC_022128 NA coding downstream 45660 6328231 ~ 6354179 (-)
XLOC_022127 NA coding downstream 74925 6313582 ~ 6324914 (-)
XLOC_022126 csrp1a coding downstream 580847 5765514 ~ 5818992 (-)
XLOC_022125 phlda3 coding downstream 640597 5756442 ~ 5759242 (-)
XLOC_022124 tnni1a coding downstream 670355 5723090 ~ 5729484 (-)
XLOC_022130 bmp7b coding upstream 1564 6421414 ~ 6522099 (-)
XLOC_022131 mipb coding upstream 217761 6637611 ~ 6641223 (-)
XLOC_022132 CR450824.2 coding upstream 229221 6649071 ~ 6660985 (-)
XLOC_022133 baz2a coding upstream 253596 6673446 ~ 6722101 (-)
XLOC_022134 ptges3b coding upstream 316266 6736116 ~ 6749820 (-)
XLOC_022121 dre-let-7e non-coding downstream 968322 5431418 ~ 5431517 (-)
XLOC_022120 dre-let-7a-5 non-coding downstream 968520 5431196 ~ 5431319 (-)
XLOC_022119 CR936540.1 non-coding downstream 1034494 5211021 ~ 5365345 (-)
XLOC_022141 NA non-coding upstream 564822 6984672 ~ 6997683 (-)
XLOC_022144 NA non-coding upstream 751016 7170866 ~ 7217574 (-)
XLOC_022145 NA non-coding upstream 780393 7200243 ~ 7202861 (-)
XLOC_022146 mir1-1 non-coding upstream 790307 7210157 ~ 7210262 (-)
XLOC_022147 NA non-coding upstream 889713 7309563 ~ 7323879 (-)

Expression


Co-expression Network