XLOC_022124 (tnni1a)


Basic Information

Item Value
gene id XLOC_022124
gene name tnni1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5723090 ~ 5729484 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043714
AGGAAGTCCAAGATCTCAGCCTCAAGAAAACTCATGCTAAAGAGTTTGATGGTGGCCAAAGCCAAAGAGGAGCTGGATCAGGAGGTGTTGGATAAAGAGGAGGATAAGCAGAAGTATCTGATGGAGAAAGCTCCTCCTCTGCAGACACAGAGCATGTCATTCTCTGAGCTTCAGGGACTCTGTCAAGAGCTTCATGCTAAGATAGATTTGGTGGATGAAGAGCGCTATGATATTGAAGCCAAAGTCTTACTGAATAAGCGTGAGATCAAAGATCTAAACATTAAAGTTTTGGACCTGAGAGGTAAGTTCAAGCGGCCCCCGCTGAGGAGGGTAAGGGTGTCTGCAGATGCCATTCTCCGGTCACTGCTAGGCTCAAAACACAAAGTCTCCATGGACCTACGAGCCAACCTCAAATCTGTGAAAAAAGAAGATACGGAGAAGAAGAGGCCGGTTGAGGACAGCGATTGGAGGAAGAATGTAGAGGCCATGTCTGGTATGGAGGGAAGAAAAAAGATGTTTGATGCAGCGAAAGTCTCCACCCAGTGA

Function

symbol description
tnni1a Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-266 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

Ensembl:

ensembl_id ENSDARG00000000474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043714 True 546 mRNA 0.47 5 5723090 5729484

Neighbor

gene id symbol gene type direction distance location
XLOC_022123 lad1 coding downstream 3637 5687972 ~ 5719453 (-)
XLOC_022122 tnnt2a coding downstream 37918 5653224 ~ 5685172 (-)
XLOC_022121 dre-let-7e coding downstream 291573 5431418 ~ 5431517 (-)
XLOC_022120 dre-let-7a-5 coding downstream 291771 5431196 ~ 5431319 (-)
XLOC_022119 CR936540.1 coding downstream 357745 5211021 ~ 5365345 (-)
XLOC_022125 phlda3 coding upstream 26958 5756442 ~ 5759242 (-)
XLOC_022126 csrp1a coding upstream 36030 5765514 ~ 5818992 (-)
XLOC_022127 NA coding upstream 584098 6313582 ~ 6324914 (-)
XLOC_022128 NA coding upstream 598747 6328231 ~ 6354179 (-)
XLOC_022129 BX323087.2 coding upstream 670355 6399839 ~ 6419850 (-)
XLOC_022118 NA non-coding downstream 523336 5190777 ~ 5199754 (-)
XLOC_022117 FO904870.1 non-coding downstream 596924 5119732 ~ 5126166 (-)
XLOC_022141 NA non-coding upstream 1255188 6984672 ~ 6997683 (-)
XLOC_022144 NA non-coding upstream 1441382 7170866 ~ 7217574 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding CI01000002 null 738127 ~ 744755 (+)