RNA id: TCONS_00043714


Basic Information

Item Value
RNA id TCONS_00043714
length 546
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_022124
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5723090 ~ 5729484 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAAGTCCAAGATCTCAGCCTCAAGAAAACTCATGCTAAAGAGTTTGATGGTGGCCAAAGCCAAAGAGGAGCTGGATCAGGAGGTGTTGGATAAAGAGGAGGATAAGCAGAAGTATCTGATGGAGAAAGCTCCTCCTCTGCAGACACAGAGCATGTCATTCTCTGAGCTTCAGGGACTCTGTCAAGAGCTTCATGCTAAGATAGATTTGGTGGATGAAGAGCGCTATGATATTGAAGCCAAAGTCTTACTGAATAAGCGTGAGATCAAAGATCTAAACATTAAAGTTTTGGACCTGAGAGGTAAGTTCAAGCGGCCCCCGCTGAGGAGGGTAAGGGTGTCTGCAGATGCCATTCTCCGGTCACTGCTAGGCTCAAAACACAAAGTCTCCATGGACCTACGAGCCAACCTCAAATCTGTGAAAAAAGAAGATACGGAGAAGAAGAGGCCGGTTGAGGACAGCGATTGGAGGAAGAATGTAGAGGCCATGTCTGGTATGGAGGGAAGAAAAAAGATGTTTGATGCAGCGAAAGTCTCCACCCAGTGA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-266 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

Ensembl:

ensembl_id ENSDART00000000488

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044713 lncRNA downstream 523336 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00043704 lncRNA downstream 596924 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00043692 lncRNA downstream 797481 4917916 ~ 4925609 (-) False XLOC_022113
TCONS_00043691 lncRNA downstream 797959 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00044945 lncRNA upstream 584098 6313582 ~ 6324914 (-) True XLOC_022127
TCONS_00044946 lncRNA upstream 598747 6328231 ~ 6347320 (-) False XLOC_022128
TCONS_00043720 lncRNA upstream 670355 6399839 ~ 6403536 (-) False XLOC_022129
TCONS_00043721 lncRNA upstream 673723 6403207 ~ 6410752 (-) False XLOC_022129
TCONS_00044714 lncRNA upstream 680259 6409743 ~ 6419850 (-) True XLOC_022129
TCONS_00043713 mRNA downstream 3637 5687972 ~ 5719453 (-) True XLOC_022123
TCONS_00043709 mRNA downstream 37918 5653224 ~ 5685172 (-) False XLOC_022122
TCONS_00043712 mRNA downstream 38067 5662088 ~ 5685023 (-) True XLOC_022122
TCONS_00043711 mRNA downstream 39943 5653373 ~ 5683147 (-) False XLOC_022122
TCONS_00043710 mRNA downstream 39943 5653373 ~ 5683147 (-) False XLOC_022122
TCONS_00043715 mRNA upstream 26958 5756442 ~ 5759242 (-) True XLOC_022125
TCONS_00043716 mRNA upstream 36030 5765514 ~ 5783498 (-) False XLOC_022126
TCONS_00043717 mRNA upstream 37654 5767138 ~ 5783421 (-) False XLOC_022126
TCONS_00043718 mRNA upstream 39245 5768729 ~ 5818992 (-) True XLOC_022126
TCONS_00043719 mRNA upstream 603922 6333406 ~ 6354179 (-) True XLOC_022128
TCONS_00043708 other downstream 291573 5431418 ~ 5431517 (-) True XLOC_022121
TCONS_00043707 other downstream 291771 5431196 ~ 5431319 (-) True XLOC_022120
TCONS_00043706 other downstream 357745 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043705 other downstream 357906 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043690 other downstream 797467 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043740 other upstream 1232036 6961520 ~ 6982874 (-) False XLOC_022140
TCONS_00043741 other upstream 1236848 6966332 ~ 6982916 (-) True XLOC_022140
TCONS_00043747 other upstream 1442636 7172120 ~ 7172203 (-) True XLOC_022144
TCONS_00043748 other upstream 1480673 7210157 ~ 7210262 (-) True XLOC_022146
TCONS_00043749 other upstream 1851702 7581186 ~ 7581302 (-) True XLOC_022149

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000002_00738127_00744469.mRNA True 790 mRNA 0.42 4 CI01000002 738127 ~ 744755 (+)