Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043717 |
| length | 908 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_022126 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 5765514 ~ 5818992 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0007254 | JNK cascade | biological_process |
| GO:0045214 | sarcomere organization | biological_process |
| GO:0031102 | neuron projection regeneration | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0060537 | muscle tissue development | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0042805 | actinin binding | molecular_function |
| GO:0008307 | structural constituent of muscle | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030909-4 | Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Acts upstream of or within several processes, including JNK cascade; gastrulation; and neuron projection regeneration. Predicted to be active in Z disc and nucleus. Is expressed in several structures, including axial hypoblast; axis; brainstem; cardiovascular system; and mesoderm. Orthologous to human CSRP1 (cysteine and glycine rich protein 1). |
| ensembl_id | ENSDART00000131521 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044713 | lncRNA | downstream | 567384 | 5190777 ~ 5199754 (-) | True | XLOC_022118 |
| TCONS_00043704 | lncRNA | downstream | 640972 | 5119732 ~ 5126166 (-) | True | XLOC_022117 |
| TCONS_00043692 | lncRNA | downstream | 841529 | 4917916 ~ 4925609 (-) | False | XLOC_022113 |
| TCONS_00043691 | lncRNA | downstream | 842007 | 4916969 ~ 4925131 (-) | False | XLOC_022113 |
| TCONS_00044945 | lncRNA | upstream | 530161 | 6313582 ~ 6324914 (-) | True | XLOC_022127 |
| TCONS_00044946 | lncRNA | upstream | 544810 | 6328231 ~ 6347320 (-) | False | XLOC_022128 |
| TCONS_00043720 | lncRNA | upstream | 616418 | 6399839 ~ 6403536 (-) | False | XLOC_022129 |
| TCONS_00043721 | lncRNA | upstream | 619786 | 6403207 ~ 6410752 (-) | False | XLOC_022129 |
| TCONS_00044714 | lncRNA | upstream | 626322 | 6409743 ~ 6419850 (-) | True | XLOC_022129 |
| TCONS_00043715 | mRNA | downstream | 7896 | 5756442 ~ 5759242 (-) | True | XLOC_022125 |
| TCONS_00043714 | mRNA | downstream | 37654 | 5723090 ~ 5729484 (-) | True | XLOC_022124 |
| TCONS_00043713 | mRNA | downstream | 47685 | 5687972 ~ 5719453 (-) | True | XLOC_022123 |
| TCONS_00043712 | mRNA | downstream | 82115 | 5662088 ~ 5685023 (-) | True | XLOC_022122 |
| TCONS_00043710 | mRNA | downstream | 83991 | 5653373 ~ 5683147 (-) | False | XLOC_022122 |
| TCONS_00043719 | mRNA | upstream | 549985 | 6333406 ~ 6354179 (-) | True | XLOC_022128 |
| TCONS_00043723 | mRNA | upstream | 637993 | 6421414 ~ 6522099 (-) | False | XLOC_022130 |
| TCONS_00043722 | mRNA | upstream | 637993 | 6421414 ~ 6522099 (-) | False | XLOC_022130 |
| TCONS_00043724 | mRNA | upstream | 638350 | 6421771 ~ 6522099 (-) | True | XLOC_022130 |
| TCONS_00043725 | mRNA | upstream | 854190 | 6637611 ~ 6641223 (-) | True | XLOC_022131 |
| TCONS_00043708 | other | downstream | 335621 | 5431418 ~ 5431517 (-) | True | XLOC_022121 |
| TCONS_00043707 | other | downstream | 335819 | 5431196 ~ 5431319 (-) | True | XLOC_022120 |
| TCONS_00043706 | other | downstream | 401793 | 5300279 ~ 5365345 (-) | True | XLOC_022119 |
| TCONS_00043705 | other | downstream | 401954 | 5211021 ~ 5365184 (-) | False | XLOC_022119 |
| TCONS_00043690 | other | downstream | 841515 | 4916955 ~ 4925623 (-) | False | XLOC_022113 |
| TCONS_00043740 | other | upstream | 1178099 | 6961520 ~ 6982874 (-) | False | XLOC_022140 |
| TCONS_00043741 | other | upstream | 1182911 | 6966332 ~ 6982916 (-) | True | XLOC_022140 |
| TCONS_00043747 | other | upstream | 1388699 | 7172120 ~ 7172203 (-) | True | XLOC_022144 |
| TCONS_00043748 | other | upstream | 1426736 | 7210157 ~ 7210262 (-) | True | XLOC_022146 |
| TCONS_00043749 | other | upstream | 1797765 | 7581186 ~ 7581302 (-) | True | XLOC_022149 |
