XLOC_022140 (edem2)


Basic Information

Item Value
gene id XLOC_022140
gene name edem2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6948941 ~ 6982986 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043738
GCGCATGCTACCTGCACGTCAGCATTCGCTCGCACGCACGCGCAGTGTGTGCacttcctattattattattgtatagtaTTTGTGCACCTCCATGTAGCCGggaattattgtattatttacctCTGTTCACATCTCGTTACTTCATGCTTACTTTCCTTTTCTCCGCCATTTTCTGCGCCGCGTACCTGTCTCCGATCATCAGTCATGTTAAAGGCAGAGACTTTACTGAGCAGGAAATGTCTCATTACAGGGACAGAGTAAAGTCCATGTTTTATCATGCATATAACAGCTATCTGGACAATGCATATCCATATGATGAGCTGAGGCCGCTGACCTGTGATGGACAGGACACCTGGGGCAGTTTCTCCCTCACACTCATAGATGCTCTGGACACATTGCTGATTCTAGGAAACCACACAGAGTTTCAGCGTGTGGCCACTCTGCTTCAGGACACTGTTGACTTCGACATCGACGTCAATGCGTCTGTGTTTGAGACAAATATACGAGTGGTCGGTGGGCTTCTCTCGGCTCATCTGCTCTCCAAGCGTGCTGGGATGAAGGTGGAGGAGGGCTGGCCCTGCTCTGGACCCCTTCTGCGCATGGCAGAGGACGCCGCTCGAAAACTGCTTCCTGCTTTCCAGACGCCCACAGGGATGCCGTATGGAACAGTAAACCTGCTGCGGGGAGTGAACCCCGGCGAAACCCCTGTCACCTGCACCGCCGGAGTGGGCACCTTCATCCTAGAGTTTTCCACCCTCAGTCGACTCACCGGTGACCCTGTGTTCGAGAATGTTGCCCGCAAAGCTCTCAGGGCCTTATGGAGAACGCGCTCTGACATCGGCCTGGTGGGCAATCACATAGATGTCATAACCTCGAAGTGGGTCGCTCAGGATGCAGGCATTGGAGCAGGAGTTGATTCATATTTCGAATATCTTGTTAAGGGTGCCATCATGCTTCAAGATGAGAAGCTGTTGACAATGTTTTATGAATTTGATAAGTCCATAAAGAACTACACTAAGTTTGATGATTGGTATCTGTGGGTGCAGATGCATAAAGGAACAGTATCAATGCCTGTGTTTCAGTCTTTGGAGGCGTTCTGGCCTGGAATGCAGAGTTTAATAGGTGATATTTCCAGTGCTACAAAGAGCTTCCACAACTACTACAGCGTGTGGCGGCAGTTTGGAGGTCTCCCAGAATTCTACAGCATTCCTCAAGGTTACACAGTGGACAAGCGAGAGGGATATCCACTGCGGCCAGAGTTAATAGAGAGCGCAATGTATCTGTATAAGGCCACTGGAGACCCTTCATTCATCCAACTTGGCCGAGATGCAGTGGAGTCCATTGACAGAATCAGCCGGGTCAACTGTGGCTTTGCCACTGTAAAGGATGTAAGGGACCACAAGTTGGACAACCGCATGGAATCCTTCTTCCTAGCCGAGACCATTAAATACCTCTACCTCCTCTTCGATCCTGACAACTTCCTTCACAACACGGGCACAGAGTTTGAGCTGGGGGGTCTGCGGGGTGACTGTATTCTCAGCGCGGGGGGCTATGTGTTCAACACAGAGGCTCATCCGCTGGACCCCGCCGCACTCCACTGCTGCAGCCGAGAGCAGCAGGACCGCAGGGAGATTCAGGACATCCTCCTCAGCTTCTCGCAGCCGCAAACAGAGGAGCCACCACGGGACCAGAACGCAGGTGGCTCTCCGGAGAGCATTGCACTGAAGCCGGGAGAGCAGAGGAAAGCGCCGGTGCTCTCCTGCCCTACGCAGCCCTTTAGTGCCAAACTGGCCGTCATGGGTCAGGTCTTCTCTGACAACTCTTGAACACTGTCCTACCGTGCGTAAAGATGTAGATTTACCTTTGTAATTTAACTTTGGAGAGATTAAATGTTTTCTAAATATGTGTGGAGTTTTTTCCACTccttttattaaaactattaagggactgtttcatatgtttTAATTCGTCATTCTTTTTAcgacaaactgtcatagtttttaTTAAAGATGAAAACCCCTCCCTGCATGACAGCTGTACCTTTAGTAAAAGGACCGGACACCAGCACCTCccggaccgagtttggacacccctggcctagacCATAGGTCTTAAAActttattcctggagggccgcagctctgcacacaATAATCGAGTGTTCAAAAGAGTCTTGAACACCATCAttagttgaatcagctgtgtttgattgaaGAAAATAACCTAaggtaagtaatgtgtatttatatagcacatttatcatgtaGGCCATAcgcccaaagcgcttcacaatcatgaggagggTCTCTTCACACCCCCaagcagtgtgcagcatccatttaGATGATgagacggcagccacaggacaatgtcACCAGAGCgctcactacacaccagctataggtggaagtggagagacagtgatggagccaattcagtggatagggATGATTTGGATGCCATCatgggtaagggccgatagaTGGTTATTTGGCCCAGACACCAGGATTACACCCCTACTTTTTgcgagaagtgccatgagatttttaatgaccactgtGTTAGGACCTCTGTTTAACACCCCACCtcaaagacggcgcccactgacagtatagaccaactaccaacctacgtcacacatgacacgggtccccggttgcaaaaaacaGACAGGCTGCAATAGGAAagatgtcgtgttgtgcggtaggatgccgaattcgagtccaaaaatagaaaacttaacttttaccatccaccacacactgctttaataccgactgcagacgtctttggctaaaagggagctgaatgaagtgaggagctaattagaaatgctggactctgcagttctcatgtcatatcaggtcagttcacgctgtgctgaatcatacacatcactcgtttttgattgctgaaatgatttcagcaaaaacagttacatatggttaattaaactgtggacactgaatgctaagaatgaaacgtgaaagttacgtttattaaggtcaagttggttttatattcacacattcattcagtgacaacctgtgacacactccctatattgtttaccacggcactttgaatattcggtctgaaataacctgcaagtgtgacttgaagacaacattagcactgtttatttgactgtgaacaatgatgtacttttatagtcattggctgctgctaatatgatttcgctatttagagtttgcaaataatccATTTacgaaattatattattaagtagaaagtctgaatgtgcgaatataaaaccaactttacctctatgtgtaggttcacatatcctgccgtacaggtgaagttcactgtcagaatgcagttgtttgcgttacccaggccttgtataacgttagctccgtcttgtttctttgtctttggctaggcggaATCTCGGTGTTTAGCTCTTGAatcgagatatatccagctgcaggcccgcagaaccacacacgtttgaggcacacacaatctaggacacacaatctaggcaaaccatgtATGGTAACTTACTGTTTAGCATTATCGTCAtctattgaatttcacaaatatggtttcccatttcagtcattattattattattatatcgtaacgatcattataacatctctgcagtttttgaacttaaattatgtaaataaaaataattggttaaagaaacttatgactttattcatgtgtccatatacacaaagtaaacataatagaccgtctaattgttggatcaagtgtaataaactaattcaagctcttaatattatcattcttggtataaaaagcaaacaataatatgtcactttaaaataaataagcctACTATAGAtaaccatttaaacaatatatatagttataaactgattatcttaactgattataattataaaatcatatattaacttctatcttttactaaactgtcactgttaa
>TCONS_00043739
AGCATTCGCTCGCACGCACGCGCAGTGTGTGCacttcctattattattattgtatagtaTTTGTGCACCTCCATGTAGCCGggaattattgtattatttacctCTGTTCACATCTCGTTACTTCATGCTTACTTTCCTTTTCTCCGCCATTTTCTGCGCCGCGTACCTGTCTCCGATCATCAGTCATGTTAAAGGCAGAGACTTTACTGAGCAGGAAATGTCTCATTACAGGGACAGAGTAAAGTCCATGTTTTATCATGCATATAACAGCTATCTGGACAATGCATATCCATATGATGAGCTGAGGCCGCTGACCTGTGATGGACAGGACACCTGGGGCAGTTTCTCCCTCACACTCATAGATGCTCTGGACACATTGCTGATTCTAGGAAACCACACAGAGTTTCAGCGTGTGGCCACTCTGCTTCAGGACACTGTTGACTTCGACATCGACGTCAATGCGTCTGTGTTTGAGACAAATATACGAGTGGTCGGTGGGCTTCTCTCGGCTCATCTGCTCTCCAAGCGTGCTGGGATGAAGGTGGAGGAGGGCTGGCCCTGCTCTGGACCCCTTCTGCGCATGGCAGAGGACGCCGCTCGAAAACTGCTTCCTGCTTTCCAGACGCCCACAGGGATGCCGTATGGAACAGTAAACCTGCTGCGGGGAGTGAACCCCGGCGAAACCCCTGTCACCTGCACCGCCGGAGTGGGCACCTTCATCCTAGAGTTTTCCACCCTCAGTCGACTCACCGGTGACCCTGTGTTCGAGAATGTTGCCCGCAAAGCTCTCAGGGCCTTATGGAGAACGCGCTCTGACATCGGCCTGGTGGGCAATCACATAGATGTCATAACCTCGAAGTGGGTCGCTCAGGATGCAGGCATTGGAGCAGGAGTTGATTCATATTTCGAATATCTTGTTAAGGGTGCCATCATGCTTCAAGATGAGAAGCTGTTGACAATGTTTTATGAATTTGATAAGTCCATAAAGAACTACACTAAGTTTGATGATTGGTATCTGTGGGTGCAGATGCATAAAGGAACAGTATCAATGCCTGTGTTTCAGTCTTTGGAGGCGTTCTGGCCTGGAATGCAGAGTTTAATAGGTGATATTTCCAGTGCTACAAAGAGCTTCCACAACTACTACAGCGTGTGGCGGCAGTTTGGAGGTCTCCCAGAATTCTACAGCATTCCTCAAGGTTACACAGTGGACAAGCGAGAGGGATATCCACTGCGGCCAGAGTTAATAGAGAGCGCAATGTATCTGTATAAGGCCACTGGAGACCCTTCATTCATCCAACTTGGCCGAGATGCAGTGGAGTCCATTGACAGAATCAGCCGGGTCAACTGTGGCTTTGCCACTGATGTAAGGGACCACAAGTTGGACAACCGCATGGAATCCTTCTTCCTAGCCGAGACCATTAAATACCTCTACCTCCTCTTCGATCCTGACAACTTCCTTCACAACACGGGCACAGAGTTTGAGCTGGGGGGTCTGCGGGGTGACTGTATTCTCAGCGCGGGGGGCTATGTGTTCAACACAGAGGCTCATCCGCTGGACCCCGCCGCACTCCACTGCTGCAGCCGAGAGCAGCAGGACCGCAGGGAGATTCAGGACATCCTCCTCAGCTTCTCGCAGCCGCAAACAGAGGAGCCACCACGGGACCAGAACGCAGGTGGCTCTCCGGAGAGCATTGCACTGAAGCCGGGAGAGCAGAGGAAAGCGCCGGTGCTCTCCTGCCCTACGCAGCCCTTTAGTGCCAAACTGGCCGTCATGGGTCAGGTCTTCTCTGACAACTCTTGAACACTGTCCTACCGTGCGTAAAGATGTAGATTTACCTTTGTAATTTAACTTTGGAGAGATTAAATGTTTTCTAAATATGTGTGGAGTTTTTTCCACTccttttattaaaactattaagggactgtt
>TCONS_00043740
attatttacctCTGTTCACATCTCGTTACTTCATGCTTACTTTCCTTTTCTCCGCCATTTTCTGCGCCGCGTACCTGTCTCCGATCATCAGTCATGTTAAAGGCAGAGACTTTACTGAGCAGGAAATGTCTCATTACAGGGACAGAGTAAAGTCCATGTTTTATCATGCATATAACAGCTATCTGGACAATGCATATCCATATGATGAGCTGAGGCCGCTGACCTGTGATGGACAGGACACCTGGGGCAGATTCTAGGAAACCACACAGAGTTTCAGCGTGTGGCCACTCTGCTTCAGGACACTGTTGACTTCGACATCGACGTCAATGCGTCTGTGTTTGAGACAAATATACGAGTGGTCGGTGGGCTTCTCTCGGCTCATCTGCTCTCCAAGCGTGCTGGGATGAAGGTGGAGGAGGGCTGGCCCTGCTCTGGACCCCTTCTGCGCATGGCAGAGGACGCCGCTCGAAAACTGCTTCCTGCTTTCCAGACGCCCACAGGGATGCCGTATGGAACAGTAAACCTGCTGCGGGGAGTGAACCCCGGCGAAACCCCTGTCACCTGCACC
>TCONS_00043741
tgtatagtaTTTGTGCACCTCCATGTAGCCGggaattattgtattatttacctCTGTTCACATCTCGTTACTTCATGCTTACTTTCCTTTTCTCCGCCATTTTCTGCGCCGCGTACCTGTCTCCGATCATCAGTCATGTTAAAGGCAGAGACTTTACTGAGCAGGAAATGTCTCATTACAGGGACAGAGTAAAGTCCATGTTTTATCATGCATATAACAGCTATCTGGACAATGCATATCCATATGATGAGCTGAGGCCGCTGACCTGTGATGGACAGGACACCTGGGGCAGTTTCTCCCTCACACTCATAGATGCTCTGGACACATTGCTGATTCTAGGAAACCACACAGAGTTTCAGCGTGTGGCCACTCTGCTTCAGGACACTGTTGACTTCGACATCGACGTCAATGCGTCTGTGTTTGAGACAAATATACGAGTGGTCGGTGGGCTTCTCTCGGCTCATCTGCTCTCCAAGCGTGCTGGGATGAAGGTGGAGGAGGGCTGGCCCTGCTCTGGACCCCTTCTGCGCATGGCAGAGGACGCCGCTCGAAAACTGCTTCCTGGCACCGGAGGACTCGCCGCGAAGACACATTTGTCACTGTGATCTTTCAGGAATCCATCTCATTATCTCcattcctccatgaccaccacagcagctgctcagaatTCGGATTTGTCCAGGATTATGAAAATctcaggaataaaaaaaaaaaaaatactagcaTAAGCGGAGATgctgttcaa

Function

symbol description
edem2 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EDEM2 (ER degradation enhancing alpha-mannosidase like protein 2).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-060519-1 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EDEM2 (ER degradation enhancing alpha-mannosidase like protein 2).

Ensembl:

ensembl_id ENSDARG00000028448

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043738 False 3947 mRNA 0.45 11 6948941 6982986
TCONS_00043739 False 1927 mRNA 0.50 11 6950935 6982966
TCONS_00043740 False 568 nonsense_mediated_decay 0.52 5 6961520 6982874
TCONS_00043741 True 745 processed_transcript 0.48 6 6966332 6982916

Neighbor

gene id symbol gene type direction distance location
XLOC_022139 si:ch211-117c9.2 coding downstream 28834 6882410 ~ 6920107 (-)
XLOC_022138 trim35-39 coding downstream 69210 6872473 ~ 6879731 (-)
XLOC_022137 ftr58 coding downstream 82979 6856469 ~ 6865962 (-)
XLOC_022136 ftr59 coding downstream 96645 6845635 ~ 6852296 (-)
XLOC_022135 FP102169.1 coding downstream 183288 6754910 ~ 6765653 (-)
XLOC_022141 NA coding upstream 1686 6984672 ~ 6997683 (-)
XLOC_022142 prpf6 coding upstream 15647 6998633 ~ 7052412 (-)
XLOC_022143 slco4a1 coding upstream 84210 7067196 ~ 7125494 (-)
XLOC_022144 NA coding upstream 187880 7170866 ~ 7217574 (-)
XLOC_022145 NA coding upstream 217257 7200243 ~ 7202861 (-)
XLOC_022129 BX323087.2 non-coding downstream 529091 6399839 ~ 6419850 (-)
XLOC_022128 NA non-coding downstream 594762 6328231 ~ 6354179 (-)
XLOC_022127 NA non-coding downstream 624027 6313582 ~ 6324914 (-)
XLOC_022121 dre-let-7e non-coding downstream 1517424 5431418 ~ 5431517 (-)
XLOC_022120 dre-let-7a-5 non-coding downstream 1517622 5431196 ~ 5431319 (-)
XLOC_022146 mir1-1 non-coding upstream 227171 7210157 ~ 7210262 (-)
XLOC_022147 NA non-coding upstream 326577 7309563 ~ 7323879 (-)

Expression


Co-expression Network