XLOC_022145


Basic Information

Item Value
gene id XLOC_022145
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7200243 ~ 7202861 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044949
ccaatactcatgaaaccgtctaaagcagacatttcccttgacattgaaataattgttggctgtttaacagtctttggtttcattaattaattactttttattccagtttattatgttttggctaagcacacagttatgttcattaaatattatttcctattctatgttaactgtataaaattaaataaagttgcagtacaaccaaaaagatgttggtaaccaaatcgttttgggggctataacattctgttattatctgttaaaagttaatttgtattaatttctacgttgagttaaaaaaaggtttgaagtTCTATAACTATTGtggaaaagatatagcccttttcacagtaatttgctgtaatcatgctacctgccataatttcacaataaaattataaatacaacatattactgtgaatttttcagttaaatactgtgaagggatactaatgtaatttactgtgaaaaattacagtaacttgttgtgaaaacctggaaattttttacagtgtgtgaatgagtcattgaatcaAGTGGTTTGTTCAAGAGCACACATTCATTCAGCAATCTCCCCAATGAAGTCCTTATAAATCACTTGTTAAATTCGCTcaagagattttaaaaaaaaaatatgaatgaaactaTTGTAGTCAGTATGAATGAGTAACTGAATCATTTAAGagatttgttcaaaaacactgattcactGAGTAGGGCCACCAAATAAGGTCCTTTTGAATGactcactgaatcattcattcaagaaatgtgttttaaatgcataaatttaCTAATAAAACAAGTGTTGAATGACTTCTTCAATAATTTTTtcaagagtttaaaaaaaaatactgaatcatTAGGTAATGAAACAAAGTAAGTCCTTATTAATGACtggtttaaaaacaaatatgaatgaaaCTACTCAAGTCAGTATGAACGAGTCACTGAGACATTAATTTaagagatttgtttaaaaacGCTTATTCATCTAGTTATAAAACTAATGAATTACTTGTGAATGagtcattaaatcatttaatcAAGTGGTTTGTTCAAGAGCACACATTCATTCAGCAATCTCCCCAAATGAAGTCCTTATAAATCACTTGTTAAATAATTCGCTCAAGAGATttgtttaagaaataaatatgaatgaaactATTGAAGTCAGTATGAATGAGTAACTGAATCATTAAAGagatttgttcaaaaacactgattcactGAGTAGGGCcaccaaataagtatttttaaatgactcactgaatcaTTCATCCAAGAAATGTGTATTAATTCACTAATGAAAGCATTAATTTACTAATGAAACAAGTGCTTATGAATAACTTGAATCGTTcgtccatcttttttttttcaaaaatactgAATTATTAAGTAATGAAATGAAGTAAATCCTTATTAATGACtgctttcaaaaataaatatgaatgaaataaaGTCAGTATGAATGAGTCAGACATTCATTTAAGACATTTGTTCAAAAACGCTGAGTCAtccagtaataaaaataatgaattactTGAAAATGAGTCATTGAATCAGTTGTTCAAGTGGTTCGTTTAAGAGCACACATTCAGTCTGTAATGCCCCCAATGAAGTCCTTATAAATAACTTGTTGAATCATTCGCTCAAGAGATTTGTTGAAGAAATAAATATGCTTCATAactctgctttaaaaaaataaatatgaatgaataaagtctGTATGAATGAGTCAGAGACGttcatttaagacatttgtaaaaaaaaaaaaaaaaaaagcagagtcatccagtaataaaaataataaattacttgtgaatgagtcattgaatcaGTTGTTCAAGTGGTTCGTTTAAGAGCACAAATGAAGCCCCCAATGAAGTTCTTAGGGAAAACATATGAACAAAACTATTGAAGTCAGTATGAATGAGTAACTGAATCATTTAAGagatttgttcaaaaacactgattcattgAGTAGGGCCACCAAATAAGTGTTTAAATGACTcactaaatcattcattcaagaaatgtgtattattaattatatgctatttatatttgttttattaaaatcaagcttagatt

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0008015 blood circulation biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0044057 regulation of system process biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005593 FACIT collagen trimer cellular_component
GO:0005594 collagen type IX trimer cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005924 obsolete cell-substrate adherens junction cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044949 True 2094 lncRNA 0.29 2 7200243 7202861

Neighbor

gene id symbol gene type direction distance location
XLOC_022143 slco4a1 coding downstream 74749 7067196 ~ 7125494 (-)
XLOC_022142 prpf6 coding downstream 147831 6998633 ~ 7052412 (-)
XLOC_022141 NA coding downstream 202560 6984672 ~ 6997683 (-)
XLOC_022140 edem2 coding downstream 217257 6948941 ~ 6982986 (-)
XLOC_022139 si:ch211-117c9.2 coding downstream 280136 6882410 ~ 6920107 (-)
XLOC_022146 mir1-1 coding upstream 7296 7210157 ~ 7210262 (-)
XLOC_022147 NA coding upstream 106702 7309563 ~ 7323879 (-)
XLOC_022148 NA coding upstream 216949 7419810 ~ 7428593 (-)
XLOC_022149 CU633736.1 coding upstream 378325 7581186 ~ 7581302 (-)
XLOC_022150 plagl2 coding upstream 389148 7592009 ~ 7674902 (-)
XLOC_022129 BX323087.2 non-coding downstream 780393 6399839 ~ 6419850 (-)
XLOC_022128 NA non-coding downstream 846064 6328231 ~ 6354179 (-)
XLOC_022127 NA non-coding downstream 875329 6313582 ~ 6324914 (-)
XLOC_022121 dre-let-7e non-coding downstream 1768726 5431418 ~ 5431517 (-)
XLOC_022151 NA non-coding upstream 530278 7733139 ~ 7735392 (-)

Expression


Co-expression Network