XLOC_022150 (plagl2)


Basic Information

Item Value
gene id XLOC_022150
gene name plagl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7592009 ~ 7674902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043750
CTGAATTCCCTAAACACCGCCGCGATATTGAACCAGAGCCTGGAAGGCAGGGCAGCCACGGCCGAGTTTCAATGGCAACGGCACCCTAGGGCTGCCATGGCAGCAGCTGCCGCCGATGCCCCACACCACATTGCCACACTGACGCTGGAGGACGAGGATCGACGAGGTGCCACCAAAGTGTTTGGAGGTCCCGCTGCTGGGAGGACGGAAAGAGAGACCGAGAacgagagggagagggagagggaaGGCAGTGGGAGCGAGTGTTTGGTGTGCGGTGCCCTCTTCAGCTCACAGGACAAGCTTCGGCTCCACGCAATCTGTCACGCAGGAGAGAAACCTTTCCACTGTTCCCAGCCCCATTGCCCTAAGGCTTTCAGTTCCAAATACAAGCTTTTTAGGCATATGGCCACACACTCCCCACAGAAGACTCATCAGTGTTCATTTTGTGAAAAGATGTTTCACCGCAAAGATCACCTGAAAAACCACCTGCAGACTCACGACCCCAACAAAGAGGCCTTTAAGTGCGAAGAGTGTGGCAAACACTATAACACAAAGCTGGGCTACAAGCGCCACATGGCCATGCACTCAGCCACCGCTGGTGATCTTACCTGTAAGGTGTGCTTGCAAAGCTACGAGAGCACGCCAGCACTCTTGGAGCACCTCAAGAGCCACTCGGGCAAGTCTTCAGGTGGTGCCAAGGAGAAGAAACACCCCTGTGATCACTGTGATCGTCGGTTTTACACACGGAAGGATGTCCGCCGACACATGGTGGTACACACGGGTCGCAAAGACTTCCTGTGCCAGTACTGTGCCCAGCGTTTTGGGCGGAAGGACCATCTGACACGACATGTCAAGAAGAGCCACTCGCAAGAGCTGCTGAAAATCAAGACAGAACCTCCAGATATGTTGGGTATACTTGGGTCTGGTTCTCCACCGTGTGCTGTGAAAGAAGAAATAAGCCCTATGATGTGTAGCATGGGACCTACCAAGGACTCAATGATGGCAAAGCCTTTCCACGGTGCCACCCCTTTTCCCATGGGTATGTACAACCCTCATCATCTCCAGGCCATGTCCAATCCAGGTGTGGGTCACCATCATTCATTGGTCCCAGGGTCGTTACCTACTGCCATGGGGATGGGCTGCCATATGGAACCTCCATCATCACTGCACCACCATCACCCacaccatcatcaccatcaccaCCCTCACCATCACCACCAGTCCCCACCTACACACCAGCAACAGCCTTCCCTGCAGAACCAGCAACAACAGCACCCTCAGCCACCGCCCAAGTACCAGCTCGGATCTACCTCATACCTGCTTGAGAAGCCCCTGAAGGTGGAGATGGAGAGTTTCCTGATGGATCTACAGAGTGGACTCCCAGTACCTCCGCCATCCTCTGCCGATCCCCACTCAGCAGCTTCCCCCATCAAGGAGGGTTTGGAACCTTCGACAGGACTGTCGGATGACCTTTGCGGGGACCCCCTCATGTCCAAGAGCCCCGCTGTCATTGCTGAGTCTTTGTGTGCTGCTAACATGGACTTTTCTCATCTGCTGAGCTTTATTCCACTCAATCTACAGCCTTACAGTGCCCCCATGAGTTCGGGAGGACTGGTAATGGGTTACTCCACCCCCTCCACAGTTTCTTCTTCCTCATCATCGTCAGCATCTTCGCATGCTGTCGAACCACACGCTGCCACAGCCACCGCCGCAGTGCCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAACCAGGCTCCGGTGGGGGTCTCGGTCTTGGGCCTCTGCACCCACTCCCACCAGTGTTCAGCTCTAGCCTCAGTACGACCACTTTGCCTCGCTTTCACCAGGCCTTTCAATGAGGGGGCTCAGTGTTAGTGCTCCCCCTAGGGGTGTGGAGATAGAAAACTTGAACACATAGAAGCCTTAACAAAAGCGCacaacagctttttttttattgagccTGGAGGAAAATAAGCATATGAGCTTTTATTTAGGCTGTCTGAAATTTAGCTATGATTTTTTTGAATACCCTTTTGAACCTCTCCCATCATCCCCTCTCCTACATTTTCGTAGTTAGACAGCAGCATCAGTAGGCCT
>TCONS_00043752
GAAAAGTTTGTGAAAGTGGCCTGACGTCACACTCCCACAATGCTCGCGCGCCCCATAACTCTGCTGCTGCAGCCTGAGGAGCGCGAGACACTCAGGCCccgaaaaaagaaaaattagagaaaaaatttggaaaaaataatcaaacaacagATCAAGAGGAGAAAGACCGGGAACGGTGGCGTGGGACTCCCACGGGTGAAGATGATGATGAGCACTATTGTCGCCTACTCAACCCCAGTCATGGCAGGTGGGACTGGATGAGAGTGTGGAGGTGAATAAAGAAGCCAGAAAAAGCACTTACATTTCTTTTGGGAGCACATTAAGGATATCAAACAGTTTAAGAGCCTGAATTCCCTAAACACCGCCGCGATATTGAACCAGAGCCTGGAAGGCAGGGCAGCCACGGCCGAGTTTCAATGGCAACGGCACCCTAGGGCTGCCATGGCAGCAGCTGCCGCCGATGCCCCACACCACATTGCCACACTGACGCTGGAGGACGAGGATCGACGAGGTGCCACCAAAGTGTTTGGAGGTCCCGCTGCTGGGAGGACGGAAAGAGAGACCGAGAacgagagggagagggagagggaaGGCAGTGGGAGCGAGTGTTTGGTGTGCGGTGCCCTCTTCAGCTCACAGGACAAGCTTCGGCTCCACGCAATCTGTCACGCAGGAGAGAAACCTTTCCACTGTTCCCAGCCCCATTGCCCTAAGGCTTTCAGTTCCAAATACAAGCTTTTTAGGCATATGGCCACACACTCCCCACAGAAGACTCATCAGTGTTCATTTTGTGAAAAGATGTTTCACCGCAAAGATCACCTGAAAAACCACCTGCAGACTCACGACCCCAACAAAGAGGCCTTTAAGTGCGAAGAGTGTGGCAAACACTATAACACAAAGCTGGGCTACAAGCGCCACATGGCCATGCACTCAGCCACCGCTGGTGATCTTACCTGTAAGGTGTGCTTGCAAAGCTACGAGAGCACGCCAGCACTCTTGGAGCACCTCAAGAGCCACTCGGGCAAGTCTTCAGGTGGTGCCAAGGAGAAGAAACACCCCTGTGATCACTGTGATCGTCGGTTTTACACACGGAAGGATGTCCGCCGACACATGGTGGTACACACGGGTCGCAAAGACTTCCTGTGCCAGTACTGTGCCCAGCGTTTTGGGCGGAAGGACCATCTGACACGACATGTCAAGAAGAGCCACTCGCAAGAGCTGCTGAAAATCAAGACAGAACCTCCAGATATGTTGGGTATACTTGGGTCTGGTTCTCCACCGTGTGCTGTGAAAGAAGAAATAAGCCCTATGATGTGTAGCATGGGACCTACCAAGGACTCAATGATGGCAAAGCCTTTCCACGGTGCCACCCCTTTTCCCATGGGTATGTACAACCCTCATCATCTCCAGGCCATGTCCAATCCAGGTGTGGGTCACCATCATTCATTGGTCCCAGGGTCGTTACCTACTGCCATGGGGATGGGCTGCCATATGGAACCTCCATCATCACTGCACCACCATCACCCacaccatcatcaccatcaccaCCCTCACCATCACCACCAGTCCCCACCTACACACCAGCAACAGCCTTCCCTGCAGAACCAGCAACAACAGCACCCTCAGCCACCGCCCAAGTACCAGCTCGGATCTACCTCATACCTGCTTGAGAAGCCCCTGAAGGTGGAGATGGAGAGTTTCCTGATGGATCTACAGAGTGGACTCCCAGTACCTCCGCCATCCTCTGCCGATCCCCACTCAGCAGCTTCCCCCATCAAGGAGGGTTTGGAACCTTCGACAGGACTGTCGGATGACCTTTGCGGGGACCCCCTCATGTCCAAGAGCCCCGCTGTCATTGCTGAGTCTTTGTGTGCTGCTAACATGGACTTTTCTCATCTGCTGAGCTTTATTCCACTCAATCTACAGCCTTACAGTGCCCCCATGAGTTCGGGAGGACTGGTAATGGGTTACTCCACCCCCTCCACAGTTTCTTCTTCCTCATCATCGTCAGCATCTTCGCATGCTGTCGAACCACACGCTGCCACAGCCACCGCCGCAGTGCCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAACCAGGCTCCGGTGGGGGTCTCGGTCTTGGGCCTCTGCACCCACTCCCACCAGTGTTCAGCTCTAGCCTCAGTACGACCACTTTGCCTCGCTTTCACCAGGCCTTTCAATGA
>TCONS_00043751
GAAAAGTTTGTGAAAGTGGCCTGACGTCACACTCCCACAATGCTCGCGCGCCCCATAACTCTGCTGCTGCAGCCTGAGGAGCGCGAGACACTCAGGCCccgaaaaaagaaaaattagagaaaaaatttggaaaaaataatcaaacaacagATCAAGAGGAGAAAGACCGGGAACGGTGGCGTGGGACTCCCACGGGTGAAGATGATGATGAGCACTATTGTCGCCTACTCAACCCCAGTCATGGCAGGTGGGACTGGATGAGAGTGTGGAGGTGAATAAAGAAGCCAGAAAAAGCACTTACATTTCTTTTGGGAGCACATTAAGGGTAAGCACTGTTCCCTTGTGTAAGAATGAATATACAGAGAACTGTGTAAAACAAAGGAAATGCCtgcttcatcttttttttttttccttttcacagATATCAAACAGTTTAAGAGCCTGAATTCCCTAAACACCGCCGCGATATTGAACCAGAGCCTGGAAGGCAGGGCAGCCACGGCCGAGTTTCAATGGCAACGGCACCCTAGGGCTGCCATGGCAGCAGCTGCCGCCGATGCCCCACACCACATTGCCACACTGACGCTGGAGGACGAGGATCGACGAGGTGCCACCAAAGTGTTTGGAGGTCCCGCTGCTGGGAGGACGGAAAGAGAGACCGAGAacgagagggagagggagagggaaGGCAGTGGGAGCGAGTGTTTGGTGTGCGGTGCCCTCTTCAGCTCACAGGACAAGCTTCGGCTCCACGCAATCTGTCACGCAGGAGAGAAACCTTTCCACTGTTCCCAGCCCCATTGCCCTAAGGCTTTCAGTTCCAAATACAAGCTTTTTAGGCATATGGCCACACACTCCCCACAGAAGACTCATCAGTGTTCATTTTGTGAAAAGATGTTTCACCGCAAAGATCACCTGAAAAACCACCTGCAGACTCACGACCCCAACAAAGAGGCCTTTAAGTGCGAAGAGTGTGGCAAACACTATAACACAAAGCTGGGCTACAAGCGCCACATGGCCATGCACTCAGCCACCGCTGGTGATCTTACCTGTAAGGTGTGCTTGCAAAGCTACGAGAGCACGCCAGCACTCTTGGAGCACCTCAAGAGCCACTCGGGCAAGTCTTCAGGTGGTGCCAAGGAGAAGAAACACCCCTGTGATCACTGTGATCGTCGGTTTTACACACGGAAGGATGTCCGCCGACACATGGTGGTACACACGGGTCGCAAAGACTTCCTGTGCCAGTACTGTGCCCAGCGTTTTGGGCGGAAGGACCATCTGACACGACATGTCAAGAAGAGCCACTCGCAAGAGCTGCTGAAAATCAAGACAGAACCTCCAGATATGTTGGGTATACTTGGGTCTGGTTCTCCACCGTGTGCTGTGAAAGAAGAAATAAGCCCTATGATGTGTAGCATGGGACCTACCAAGGACTCAATGATGGCAAAGCCTTTCCACGGTGCCACCCCTTTTCCCATGGGTATGTACAACCCTCATCATCTCCAGGCCATGTCCAATCCAGGTGTGGGTCACCATCATTCATTGGTCCCAGGGTCGTTACCTACTGCCATGGGGATGGGCTGCCATATGGAACCTCCATCATCACTGCACCACCATCACCCacaccatcatcaccatcaccaCCCTCACCATCACCACCAGTCCCCACCTACACACCAGCAACAGCCTTCCCTGCAGAACCAGCAACAACAGCACCCTCAGCCACCGCCCAAGTACCAGCTCGGATCTACCTCATACCTGCTTGAGAAGCCCCTGAAGGTGGAGATGGAGAGTTTCCTGATGGATCTACAGAGTGGACTCCCAGTACCTCCGCCATCCTCTGCCGATCCCCACTCAGCAGCTTCCCCCATCAAGGAGGGTTTGGAACCTTCGACAGGACTGTCGGATGACCTTTGCGGGGACCCCCTCATGTCCAAGAGCCCCGCTGTCATTGCTGAGTCTTTGTGTGCTGCTAACATGGACTTTTCTCATCTGCTGAGCTTTATTCCACTCAATCTACAGCCTTACAGTGCCCCCATGAGTTCGGGAGGACTGGTAATGGGTTACTCCACCCCCTCCACAGTTTCTTCTTCCTCATCATCGTCAGCATCTTCGCATGCTGTCGAACCACACGCTGCCACAGCCACCGCCGCAGTGCCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAACCAGGCTCCGGTGGGGGTCTCGGTCTTGGGCCTCTGCACCCACTCCCACCAGTGTTCAGCTCTAGCCTCAGTACGACCACTTTGCCTCGCTTTCACCAGGCCTTTCAATGA

Function

symbol description
plagl2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; immature eye; lateral plate mesoderm; nervous system; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-020806-1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; immature eye; lateral plate mesoderm; nervous system; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

Ensembl:

ensembl_id ENSDARG00000076657

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043750 False 2101 mRNA 0.54 2 7592009 7594723
TCONS_00043752 False 2208 mRNA 0.54 4 7592247 7674902
TCONS_00043751 True 2304 mRNA 0.53 3 7592247 7674902

Neighbor

gene id symbol gene type direction distance location
XLOC_022149 CU633736.1 coding downstream 10707 7581186 ~ 7581302 (-)
XLOC_022148 NA coding downstream 163416 7419810 ~ 7428593 (-)
XLOC_022147 NA coding downstream 268130 7309563 ~ 7323879 (-)
XLOC_022144 NA coding downstream 374435 7170866 ~ 7217574 (-)
XLOC_022151 NA coding upstream 58237 7733139 ~ 7735392 (-)
XLOC_022152 PCMTD2 coding upstream 68579 7743481 ~ 7755373 (-)
XLOC_022153 myt1b coding upstream 87131 7762033 ~ 7826849 (-)
XLOC_022154 BX005278.1 coding upstream 237207 7912109 ~ 7912223 (-)
XLOC_022155 AL627126.1 coding upstream 275183 7950085 ~ 7971776 (-)
XLOC_022156 NA non-coding upstream 343873 8018775 ~ 8155055 (-)
XLOC_022157 NA non-coding upstream 588657 8263559 ~ 8373807 (-)

Expression


Co-expression Network