XLOC_022152 (PCMTD2)


Basic Information

Item Value
gene id XLOC_022152
gene name PCMTD2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7743481 ~ 7755373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043753
agtttactttagttttaatttaaaggaTAATTGAGTGGATGATTCATTGACTCGTCAATCTTTTTTGTGAACAGGCTCAAAAGATCCGAGTCACGAATCGAATCAAAACAAATCCCTTGACGTCGTTGTGCGTGTGACGTCAGCGCGTCAGCTGGTTTATGTTTACATCGCATCAAATATTCGCAGTCAAGTTAGGCGTTATTGTGCCCAGAACCAAACACACGACATACGCGTTAATGTGATAGATGGACATTGCTAGTTTGCACGAGACAACCGCCGAGGCCCACAATCACACGACAGTGATCGGCTCTCCTCAGGACTGTCCTTAAAGGCTCATCTGCTTTGATCATGGGGGGAGCTGTGAGTGCGGGTGAGGACAACGATGAGCTGATTGACAACTTGAAGGATGCCCATTACATCCGCTCCGATCTGGTGGAGAGGGCCTTCAGAGCCATCGACAGAGCCGACTATTACCTGGAGGAGTACCGTGACAGTGCTTACAAAGACCTGGCCTGGAGGCACGGAAACCTCCATCTGTCTGCTCCATGCATCTACTCTGAGGTGATGGAGGCTTTGGATCTGCAGCCTGGCTTGTCTTTTCTCAATCTGGGCAGCGGGACGGGTTATTTGAGCACTATGGTGGGCCTTATACTGGGTCCGTTTGGTGTGAATCACGGTGTGGAACTACACAAAGATGTGGTTGATTATGCCTATCAGAAACTCGACTACTTCATCAAAAACAGTGACAGCTTTGACAAGTTTGAGTTCTGTGAGCCAACCTTTGTTGTGGGGAACTGTCTGGAGATTCCTCCGGAGAGCCGGCAGTATGACAGGGTTTACTGCGGTGCAGGAGTTCAGAAAGAGTATGAGAACTACATGAAGAACCTGCTGAAAGTTGGCGGGATATTAGTTCTCCCCCTGGAGGAGAAGTTGACCAAGATCACCCGCACAGGTCAGAGTTCCTGGGAGACCAAGAAAATCATCGCTGTGACCTTCGCTCCGCTCGTCCAGCCCAAGCAGAATGTCAATGGCAGACCTAGGAGTGTTCCTTTACCCATTTTTGAGGTGCGGACGTTGCAGGACTTGTCACGGATTGCCATCCGCCACACTCTGCGACAGCCTATAGCGATGGGTGAAGGACGCACGAAGAGACGGGTGTCTTTCCCAGGGGCCCGGGCCATGCACCGCTACGGGCCTCGCTTCGAACGCCGCCGTTTCTGCCGCCGCTTCTACCGCCAGTGCGTCAACTCTGTGGTTCTCCACGACTCCATGATTCCCACAGCCATGGACGATTGCAACTACCCTGGGGGAGtggaagaggaagaagaggaagtggaggaggaagaagaaaggGGCTGCCGGCGAGTGAGAGAAGACCTGCCTGAGGAGGACGAGGAGGGTTCTGGCGAAGAGGAGAAAAGCAAAGGCGGCTGCGCTCGTGTGGAGCCTCCTGTTAATATTCTGAGGGAGAAGATCCTAAGACTGCCATTACCTGAACCCCTGAAGATGTATCTGCTGTATTACAGGGAGAAATGA

Function

symbol description
pcmtd2 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to be involved in protein methylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104883

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043753 True 1536 mRNA 0.52 6 7743481 7755373

Neighbor

gene id symbol gene type direction distance location
XLOC_022151 NA coding downstream 8089 7733139 ~ 7735392 (-)
XLOC_022150 plagl2 coding downstream 68579 7592009 ~ 7674902 (-)
XLOC_022149 CU633736.1 coding downstream 162179 7581186 ~ 7581302 (-)
XLOC_022148 NA coding downstream 314888 7419810 ~ 7428593 (-)
XLOC_022147 NA coding downstream 419602 7309563 ~ 7323879 (-)
XLOC_022153 myt1b coding upstream 6660 7762033 ~ 7826849 (-)
XLOC_022154 BX005278.1 coding upstream 156736 7912109 ~ 7912223 (-)
XLOC_022155 AL627126.1 coding upstream 194712 7950085 ~ 7971776 (-)
XLOC_022156 NA coding upstream 263402 8018775 ~ 8155055 (-)
XLOC_022157 NA coding upstream 508186 8263559 ~ 8373807 (-)
XLOC_022146 mir1-1 non-coding downstream 533219 7210157 ~ 7210262 (-)
XLOC_022159 NA non-coding upstream 1043664 8799037 ~ 8800755 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_04795987_04803001 PCMTD2 coding CI01000021 null 4795987 ~ 4803104 (+)