RNA id: TCONS_00043750


Basic Information

Item Value
RNA id TCONS_00043750
length 2101
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_022150
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7592009 ~ 7674902 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAATTCCCTAAACACCGCCGCGATATTGAACCAGAGCCTGGAAGGCAGGGCAGCCACGGCCGAGTTTCAATGGCAACGGCACCCTAGGGCTGCCATGGCAGCAGCTGCCGCCGATGCCCCACACCACATTGCCACACTGACGCTGGAGGACGAGGATCGACGAGGTGCCACCAAAGTGTTTGGAGGTCCCGCTGCTGGGAGGACGGAAAGAGAGACCGAGAacgagagggagagggagagggaaGGCAGTGGGAGCGAGTGTTTGGTGTGCGGTGCCCTCTTCAGCTCACAGGACAAGCTTCGGCTCCACGCAATCTGTCACGCAGGAGAGAAACCTTTCCACTGTTCCCAGCCCCATTGCCCTAAGGCTTTCAGTTCCAAATACAAGCTTTTTAGGCATATGGCCACACACTCCCCACAGAAGACTCATCAGTGTTCATTTTGTGAAAAGATGTTTCACCGCAAAGATCACCTGAAAAACCACCTGCAGACTCACGACCCCAACAAAGAGGCCTTTAAGTGCGAAGAGTGTGGCAAACACTATAACACAAAGCTGGGCTACAAGCGCCACATGGCCATGCACTCAGCCACCGCTGGTGATCTTACCTGTAAGGTGTGCTTGCAAAGCTACGAGAGCACGCCAGCACTCTTGGAGCACCTCAAGAGCCACTCGGGCAAGTCTTCAGGTGGTGCCAAGGAGAAGAAACACCCCTGTGATCACTGTGATCGTCGGTTTTACACACGGAAGGATGTCCGCCGACACATGGTGGTACACACGGGTCGCAAAGACTTCCTGTGCCAGTACTGTGCCCAGCGTTTTGGGCGGAAGGACCATCTGACACGACATGTCAAGAAGAGCCACTCGCAAGAGCTGCTGAAAATCAAGACAGAACCTCCAGATATGTTGGGTATACTTGGGTCTGGTTCTCCACCGTGTGCTGTGAAAGAAGAAATAAGCCCTATGATGTGTAGCATGGGACCTACCAAGGACTCAATGATGGCAAAGCCTTTCCACGGTGCCACCCCTTTTCCCATGGGTATGTACAACCCTCATCATCTCCAGGCCATGTCCAATCCAGGTGTGGGTCACCATCATTCATTGGTCCCAGGGTCGTTACCTACTGCCATGGGGATGGGCTGCCATATGGAACCTCCATCATCACTGCACCACCATCACCCacaccatcatcaccatcaccaCCCTCACCATCACCACCAGTCCCCACCTACACACCAGCAACAGCCTTCCCTGCAGAACCAGCAACAACAGCACCCTCAGCCACCGCCCAAGTACCAGCTCGGATCTACCTCATACCTGCTTGAGAAGCCCCTGAAGGTGGAGATGGAGAGTTTCCTGATGGATCTACAGAGTGGACTCCCAGTACCTCCGCCATCCTCTGCCGATCCCCACTCAGCAGCTTCCCCCATCAAGGAGGGTTTGGAACCTTCGACAGGACTGTCGGATGACCTTTGCGGGGACCCCCTCATGTCCAAGAGCCCCGCTGTCATTGCTGAGTCTTTGTGTGCTGCTAACATGGACTTTTCTCATCTGCTGAGCTTTATTCCACTCAATCTACAGCCTTACAGTGCCCCCATGAGTTCGGGAGGACTGGTAATGGGTTACTCCACCCCCTCCACAGTTTCTTCTTCCTCATCATCGTCAGCATCTTCGCATGCTGTCGAACCACACGCTGCCACAGCCACCGCCGCAGTGCCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAACCAGGCTCCGGTGGGGGTCTCGGTCTTGGGCCTCTGCACCCACTCCCACCAGTGTTCAGCTCTAGCCTCAGTACGACCACTTTGCCTCGCTTTCACCAGGCCTTTCAATGAGGGGGCTCAGTGTTAGTGCTCCCCCTAGGGGTGTGGAGATAGAAAACTTGAACACATAGAAGCCTTAACAAAAGCGCacaacagctttttttttattgagccTGGAGGAAAATAAGCATATGAGCTTTTATTTAGGCTGTCTGAAATTTAGCTATGATTTTTTTGAATACCCTTTTGAACCTCTCCCATCATCCCCTCTCCTACATTTTCGTAGTTAGACAGCAGCATCAGTAGGCCT

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-020806-1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; immature eye; lateral plate mesoderm; nervous system; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

Ensembl:

ensembl_id ENSDART00000115298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044951 lncRNA downstream 163416 7419810 ~ 7428593 (-) True XLOC_022148
TCONS_00044950 lncRNA downstream 268130 7309563 ~ 7323879 (-) True XLOC_022147
TCONS_00044948 lncRNA downstream 374435 7170866 ~ 7217574 (-) False XLOC_022144
TCONS_00043746 lncRNA downstream 374521 7170866 ~ 7217488 (-) False XLOC_022144
TCONS_00044947 lncRNA downstream 374526 7170866 ~ 7217483 (-) False XLOC_022144
TCONS_00044952 lncRNA upstream 138416 7733139 ~ 7735392 (-) True XLOC_022151
TCONS_00043760 lncRNA upstream 355362 7950085 ~ 7971776 (-) True XLOC_022155
TCONS_00044715 lncRNA upstream 424052 8018775 ~ 8124492 (-) False XLOC_022156
TCONS_00044953 lncRNA upstream 424446 8019169 ~ 8155055 (-) True XLOC_022156
TCONS_00044954 lncRNA upstream 668836 8263559 ~ 8281746 (-) False XLOC_022157
TCONS_00043745 mRNA downstream 466515 7067196 ~ 7125494 (-) True XLOC_022143
TCONS_00043743 mRNA downstream 539597 6998633 ~ 7052412 (-) False XLOC_022142
TCONS_00043744 mRNA downstream 539647 7000180 ~ 7052362 (-) True XLOC_022142
TCONS_00043738 mRNA downstream 609023 6948941 ~ 6982986 (-) False XLOC_022140
TCONS_00043739 mRNA downstream 609043 6950935 ~ 6982966 (-) False XLOC_022140
TCONS_00043753 mRNA upstream 148758 7743481 ~ 7755373 (-) True XLOC_022152
TCONS_00043755 mRNA upstream 167310 7762033 ~ 7799184 (-) False XLOC_022153
TCONS_00043754 mRNA upstream 167310 7762033 ~ 7799184 (-) False XLOC_022153
TCONS_00043756 mRNA upstream 174721 7769444 ~ 7797207 (-) False XLOC_022153
TCONS_00043757 mRNA upstream 200699 7795422 ~ 7826849 (-) False XLOC_022153
TCONS_00043749 other downstream 10707 7581186 ~ 7581302 (-) True XLOC_022149
TCONS_00043748 other downstream 381747 7210157 ~ 7210262 (-) True XLOC_022146
TCONS_00043747 other downstream 419806 7172120 ~ 7172203 (-) True XLOC_022144
TCONS_00043741 other downstream 609093 6966332 ~ 6982916 (-) True XLOC_022140
TCONS_00043740 other downstream 609135 6961520 ~ 6982874 (-) False XLOC_022140
TCONS_00043758 other upstream 204370 7799093 ~ 7823785 (-) True XLOC_022153
TCONS_00043759 other upstream 317386 7912109 ~ 7912223 (-) True XLOC_022154
TCONS_00043764 other upstream 1721855 9316578 ~ 9316694 (-) True XLOC_022161
TCONS_00043765 other upstream 1760099 9354822 ~ 9354931 (-) True XLOC_022162
TCONS_00043776 other upstream 2258173 9852896 ~ 9853010 (-) True XLOC_022167

Expression Profile

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