RNA id: TCONS_00044948


Basic Information

Item Value
RNA id TCONS_00044948
length 2121
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_022144
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7170866 ~ 7217574 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGTGGGTGCAGAGCCAGGGGGGCTCCTCTTTGCCTTGACCCTTGGGGTATAAAAGCTTCGGAGCAGTGGGAGGCTCCTCCGACCAGCCCCTCCGCAAACTTCCCGTCAGTCCCGTCAACACGTTTGGCGTAAAATATGTTTGAGTTCAACATTAGGTAATTTTTAAGCTAACATTTGTTGTTTTCGGTGACGTGGACGTGTATATCGATGATGTCATTTTTGCCCTTAATGGCTACCGCTTCTCATGTGATAGGACAAGGACGGTTATTGGACAAAGTATGGACAGGATTGTCTGTGAGGATGGAGTATACAGTAAGGGTAAACGAGAAGAACAAGAAAAAGACTGCGTCATCTGCGGCGCTTCTGTTTAACAAATGATCCGATCTTTCGCTCTTTAACTCACATTGACTTCCTCCCTTCTCTGTCTTTCTCATTCCTTTTCCGTCTCTCATTTAGTCCTGTCAGCATACTGTCCATACTTTCTCCTACTCCTGTTTCAGCCGGTATTGGGCGTAGCGCTATACGTAGCTCTCTTTTTTTCTTAGGACAGAACCGAGGACACTCTGGTATTGACGGCAATGCTCTGCATTTCTTTTCATCCCCATCTCTTTCTCATCTGTCCACCCCcccaccctctctctctccctctctctatcCTCAAATTCTCAAACGCTGAATCAGCTGCTTGGGAATGGACGCTCCCCCTGCATCTTGGATGCACAAGCTGCCTCTCCCCGGTTCTGCTCTCGTCCTGCATTTGAGACTCTGGTCTCCCCCTAAAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTTTATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCACCCCGTGGAGCTCTGATGAAGAAAGCACAATATTTGCTCTGTCTGGATCACAACGCAAGACCGACTGTTGAATGAATGTCCCTTTAAGCACTAATATCATGATTAAACACTCTTTGTCCTCTTAAGACCCAGGTGAGTATTATATATGTCatgtcacattttttatttatgagctATAATTGTTGATTATGTATTCGAGCCAAATCACTATCATTGGAAAGAGGGCTCTGGGCTCTTTATGGCCTGCCATTGATTTCTTGTCTCTGGGCTGAAAGAGTGAGAGCGCGGGATGAGCCAGGTTGGATGGATGTAGGGAACGAGGGAggggtgtgtgcgtgcgtgtgcgtgtcaAAGCTGTTGAATAAGTAAAACAGTCgttccttttctctctctctctcttgcttctACACTTGTCGTGATTCTTAATGCACATGCTTGATCAATAAAGCTCATCCTGAAGTTCATAAACTGCTGAAGTGGTTTTTGCTTTTGAAGTGAAACAGACTATTCAGCTGGAAATAATGCAGGGTGGGGACGTGATTTCATCCATTGGGATTTGATTGGACTGAAACGCACTACACTATACAATATTATTGGATAGTGGTGTTTTCCAATGGTCACAAAAGTCATTTAAGGTGTGATATTTTGTTGTTACATTAACAGGTTGTAATTTACTTTGGTGCATTTTGATTACAAGAATGAATTCAAGATTGGGAAGCAGAAAAGTCACGATCcttatgcacatcttgtcagggacaCATGGCGCTGTGATTGCTAGTAAATCGCCAGAGGGCGCTCTCGAGCAGAAACTGCAAATGTGTCACAAAGAAGAGACATAGGAAATCAAGCTGAGCAGAggatttaactgctttcattgattAACAAATGACTAATAAACACACAACTAAAGAATCGTCTCACTGAAGAATTTATTTCAGACACTCAATTAAAGTTATAAGGTGAGTTTGGAGTAaaaaatttggtaacactttataataactacacactatgaatcatttactaagcgttagcatctagtgaattcattatttgttaagcattaactctacattaataaacattaataagcagtttataacagcagatacaaaggctgtattcttgacttataagcacctatataatgtgtttaataattgtattttaatacttagttaatgatttatttttcataactatattaagtattgcattatttacaaaccatttgtttttaaGAGTAGTAGAG

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0048856 anatomical structure development biological_process
GO:0016203 muscle attachment biological_process
GO:0048869 cellular developmental process biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005593 FACIT collagen trimer cellular_component
GO:0005594 collagen type IX trimer cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005604 basement membrane cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043742 lncRNA downstream 173183 6984672 ~ 6997683 (-) True XLOC_022141
TCONS_00043734 lncRNA downstream 304904 6856469 ~ 6865962 (-) True XLOC_022137
TCONS_00043728 lncRNA downstream 483680 6680809 ~ 6687186 (-) False XLOC_022133
TCONS_00044714 lncRNA downstream 751016 6409743 ~ 6419850 (-) True XLOC_022129
TCONS_00043721 lncRNA downstream 760114 6403207 ~ 6410752 (-) False XLOC_022129
TCONS_00044950 lncRNA upstream 91989 7309563 ~ 7323879 (-) True XLOC_022147
TCONS_00044951 lncRNA upstream 202236 7419810 ~ 7428593 (-) True XLOC_022148
TCONS_00044952 lncRNA upstream 515565 7733139 ~ 7735392 (-) True XLOC_022151
TCONS_00043760 lncRNA upstream 732511 7950085 ~ 7971776 (-) True XLOC_022155
TCONS_00044715 lncRNA upstream 801201 8018775 ~ 8124492 (-) False XLOC_022156
TCONS_00043745 mRNA downstream 45372 7067196 ~ 7125494 (-) True XLOC_022143
TCONS_00043743 mRNA downstream 118454 6998633 ~ 7052412 (-) False XLOC_022142
TCONS_00043744 mRNA downstream 118504 7000180 ~ 7052362 (-) True XLOC_022142
TCONS_00043738 mRNA downstream 187880 6948941 ~ 6982986 (-) False XLOC_022140
TCONS_00043750 mRNA upstream 374435 7592009 ~ 7594723 (-) False XLOC_022150
TCONS_00043752 mRNA upstream 374673 7592247 ~ 7674902 (-) False XLOC_022150
TCONS_00043751 mRNA upstream 374673 7592247 ~ 7674902 (-) True XLOC_022150
TCONS_00043753 mRNA upstream 525907 7743481 ~ 7755373 (-) True XLOC_022152
TCONS_00043755 mRNA upstream 544459 7762033 ~ 7799184 (-) False XLOC_022153
TCONS_00043741 other downstream 187950 6966332 ~ 6982916 (-) True XLOC_022140
TCONS_00043740 other downstream 187992 6961520 ~ 6982874 (-) False XLOC_022140
TCONS_00043708 other downstream 1739349 5431418 ~ 5431517 (-) True XLOC_022121
TCONS_00043707 other downstream 1739547 5431196 ~ 5431319 (-) True XLOC_022120
TCONS_00043706 other downstream 1805521 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043749 other upstream 363612 7581186 ~ 7581302 (-) True XLOC_022149
TCONS_00043758 other upstream 581519 7799093 ~ 7823785 (-) True XLOC_022153
TCONS_00043759 other upstream 694535 7912109 ~ 7912223 (-) True XLOC_022154
TCONS_00043764 other upstream 2099004 9316578 ~ 9316694 (-) True XLOC_022161
TCONS_00043765 other upstream 2137248 9354822 ~ 9354931 (-) True XLOC_022162

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU134557 True 9690 lncRNA 0.37 1 CI01000021 5116111 ~ 5125800 (+)
rainbow trout (Oncorhynchus mykiss) TU923862 True 1634 lncRNA 0.46 2 NC_048573.1 47903384 ~ 47927961 (+)
striped catfish (Pangasianodon hypophthalmus) TU300707 False 2329 lncRNA 0.42 2 NC_047610.1 12693619 ~ 12714080 (-)