RNA id: TCONS_00044952


Basic Information

Item Value
RNA id TCONS_00044952
length 1892
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_022151
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7733139 ~ 7735392 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agttcaatggactcatgaggttaatttgattcagcttaaaaattaaaGCAACCAGGTAATCCAGAGGAAAATACGGAATAGAAAGTTgtcaattttaaaaacataaacatacaatTAATCTCACAATTCTGTTCTGACATTTTACGAAGAACTGAGAATCGGTTTTGCAATTTTATATTGTAGTTTTGCAATTCTGAGgggattaaaaaaaactaatttgcaaGAAAACGTTTTTAATCTAGCAATTCTGAATTTTACCTTCAGTTCAGCAAAAACAAATATTCTttcctatgattttttttaaatttctctaaattttTGAGAGCCTAGATTGTGAGAATTTGCAAGTAAAATATTTGTGGAACTCTAAAGGATAATAATGTCAGAATGCTCAATTGCTAAGCTGTTTCAAGATTTAAATTTAACCATCTTTGACTTGGAgttgtgactttttatttttaaatagcataaagaaaaaaataaccgcactgtaaaaaaaaataaaaaaaaaaataaaaaattatatgatcgaTTAGTCCTGCCagcatgtttttagttcattgtaactttaaCTAAGTAAATCATGTTCTAGCCTAATTTTAAAAGTTgagcaagctgttttaagtcagtttaacatCATATGAAGTTCAATGACTCATGAGGTTTTTTTGATTCCgcttaaaaatttaaagcaacCAGGTAATCCAGAGGAAAATACGGAATAGCAAGTAGTCAACTGCTACTGCTTGTAATTTCCAGCTTAAATCTCCCACTTCCACTTTTTCCACTGAAGTTTATAACCCTAAGCTGCATTTATTAACAatccaaataaaaatacttttagatTAACTTATTATACGATAAAACATCACAATtatcttttttgtgtttattcAATGGCAGAAACAAGCATCCACAGCTTACAGGTCTGTGTGTCACATTTGAACATTAAACACAAGCCTGACCAACACAACACGTTCATGGCGTGTTACGCTGCTTTAAAGGAACAttcattttttggggggaaataggctaattttaaaattgtattcagTCCCctggagttaaacagttgagttttaccatgttTGTATCCATTCCGCTGATCTCCAAATggtcttttagcttagcttagcatagatcattgaatccgattagaccattagcatttcactccaaaaaaaattataaaaaaattctggataattttcccatttaaaacTTGACTCTTGTGTACTAGACTGACGGAAATTTTAAAGAAGCAATTTTCTGGGTCAATATGATATTTTACAGCACCTAAAAAGTCCCCAGTTAGGCGAAAAGGTAACAGCGCTTCGTTATGTCATCAGGTTTCTTGATTATTACTCCAGAATGACAGTGCAGATCCTAGCCATCATCACTTAGAATATAGCACTTCATTTCTTTCCATCTTAGCActgcagaagagtcaagcttaaaatagaataattattgaaactttttttgtttttgtgctggatgctaatggtctaatccgattcaatgatttatgctgagCTATGCTAAAAATGCTGCCACCAGACCCGGCTGAATGGatacaaaaatggtaaaacttaacaGTTTAACTCTAGAGACataaatgagcctatttccaaacaAAGTATAGTGTTCCTTTTAGAAAACATCAACAGGAGCTTTGACGTGGATCCAGCAATCAGGTCAAGGGACTCTCAGACCAGCATGAAACCCACTTCAACACTCGATGAGAATCTAAGGCACCCTGGAACCCTGATATTCTTAATATGTGATGACTTTTAAACCCCTCTACTGAATACAGCGCTGAAAATGCTGTTCAATAACCTGTTTTTTTAGCCAAAGAGACTCTTCCGGAAAGGCTTAGAGGCTGTTTGGGG

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0002088 lens development in camera-type eye biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044951 lncRNA downstream 304546 7419810 ~ 7428593 (-) True XLOC_022148
TCONS_00044950 lncRNA downstream 409260 7309563 ~ 7323879 (-) True XLOC_022147
TCONS_00044948 lncRNA downstream 515565 7170866 ~ 7217574 (-) False XLOC_022144
TCONS_00043746 lncRNA downstream 515651 7170866 ~ 7217488 (-) False XLOC_022144
TCONS_00044947 lncRNA downstream 515656 7170866 ~ 7217483 (-) False XLOC_022144
TCONS_00043760 lncRNA upstream 214693 7950085 ~ 7971776 (-) True XLOC_022155
TCONS_00044715 lncRNA upstream 283383 8018775 ~ 8124492 (-) False XLOC_022156
TCONS_00044953 lncRNA upstream 283777 8019169 ~ 8155055 (-) True XLOC_022156
TCONS_00044954 lncRNA upstream 528167 8263559 ~ 8281746 (-) False XLOC_022157
TCONS_00044955 lncRNA upstream 529479 8264871 ~ 8267563 (-) False XLOC_022157
TCONS_00043752 mRNA downstream 58237 7592247 ~ 7674902 (-) False XLOC_022150
TCONS_00043751 mRNA downstream 58237 7592247 ~ 7674902 (-) True XLOC_022150
TCONS_00043750 mRNA downstream 138416 7592009 ~ 7594723 (-) False XLOC_022150
TCONS_00043745 mRNA downstream 607645 7067196 ~ 7125494 (-) True XLOC_022143
TCONS_00043743 mRNA downstream 680727 6998633 ~ 7052412 (-) False XLOC_022142
TCONS_00043753 mRNA upstream 8089 7743481 ~ 7755373 (-) True XLOC_022152
TCONS_00043755 mRNA upstream 26641 7762033 ~ 7799184 (-) False XLOC_022153
TCONS_00043754 mRNA upstream 26641 7762033 ~ 7799184 (-) False XLOC_022153
TCONS_00043756 mRNA upstream 34052 7769444 ~ 7797207 (-) False XLOC_022153
TCONS_00043757 mRNA upstream 60030 7795422 ~ 7826849 (-) False XLOC_022153
TCONS_00043749 other downstream 151837 7581186 ~ 7581302 (-) True XLOC_022149
TCONS_00043748 other downstream 522877 7210157 ~ 7210262 (-) True XLOC_022146
TCONS_00043747 other downstream 560936 7172120 ~ 7172203 (-) True XLOC_022144
TCONS_00043741 other downstream 750223 6966332 ~ 6982916 (-) True XLOC_022140
TCONS_00043740 other downstream 750265 6961520 ~ 6982874 (-) False XLOC_022140
TCONS_00043758 other upstream 63701 7799093 ~ 7823785 (-) True XLOC_022153
TCONS_00043759 other upstream 176717 7912109 ~ 7912223 (-) True XLOC_022154
TCONS_00043764 other upstream 1581186 9316578 ~ 9316694 (-) True XLOC_022161
TCONS_00043765 other upstream 1619430 9354822 ~ 9354931 (-) True XLOC_022162
TCONS_00043776 other upstream 2117504 9852896 ~ 9853010 (-) True XLOC_022167

Expression Profile

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