RNA id: TCONS_00043724


Basic Information

Item Value
RNA id TCONS_00043724
length 1524
RNA type mRNA
GC content 0.53
exon number 7
gene id XLOC_022130
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6421414 ~ 6522099 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cggtTTGCCATCTATACTCGCGATCCTCCGTGCGTCTGCAGGTTGTGCGCTCTGGAAACGCAACAGGTTACAAGCGAGTGAATGAATCAATGGGAGAAATGCGGGAACTTAATAACTAATTCAACCTGCGACAACGTTTCACTGATCGTATTTGACTGATTGCATTCGTGTGGAACTCAAAACTTCATCATGGTTTCGTTGCTGGATTTAAGCGCTCTCGTCCTGTCGCTGGTGTGGGGATACTGTGTCCTGGCAGACACCGTCTTTACAAACTTTACCCTGGACAACGAGGTGCACTCGAGCTTCATCCACCGGCGCTTGAAGAGCCAGGAGCGCCGGGAGATGCAGCGGGAGATCCTGTCAATCCTCGGGTTACCGCACCGGCCGCGGCCGCACCTCCACGGCAAGCACAACGCCGCGCCGATGTTCATGCTGGATCTGTACAATGCCATGTCCACCGAGGGAGACGAAGAGGGCTTCTCGTACCCCTACAAGCCCGTTTTCACCACTCAGGGACCGCCGATTGCGACTCTTCAGGACAACAACTTTCTGAACGACGCGGACATGGTCATGAGTTTTGTTAATCTAGTTGAACACGATAAGGAGTTCTTGCCCGTGAGGCGCCATCACAGAGAATTCCGATTCGACCTTTCCAAGATTCCAGAGGGCGAAGCGGTGACTGCTGCGGAGTTCAGGATCTACAAAGACTTCGTTCCAGAGCACTTCGACAATGAGACCTTCCGCATCAGCATCTACCAAGTGTTGGAGGAACATTTAGACAGGGATTCAGATTTGTTCCTGCTGGACTCGCGGGTGATCTGGGCAGCAGAAGAGGGCTGGCTGGTTTTTGACATCACAGTCACCAGTAACCACTGGGTGCTGAACCCGGGCCGTAACCTGGGCCTGCAGCTGGCTCTGGACAGTCTGGACGGTCAGAGTGTGAACCCCTGGGTGGCGGGACTGGTGGGGCGCAGTGGCCCTCAGAGCAAACAGCCCTTCATGGTGGCCTTCTTCAAAGCCACGGAGGTCCACATCCGCAGCATCCGCTCCGCTCAGGGCGGAAACAAGCAGCGCAATCCCAACCGCTCCAAAACCGCCAAGGGCCAGGAGGCGCTGCGTGTAGCCAATATTGCAGaaaacaGCAGTGCTGACCAGAAGCAGGCCTGTAAGAAACATGAACTGTATGTCAGTTTTCGAGACCTTGGATGGCAGGATTGGATTATAGCTCCTGAAGGATACGCTGCATATTATTGCATGGGAGAATGTGCCTTTCCTCTCAACTCCTACATGAACGCCACAAACCACGCCATTGTACAGACATTGgTTCACTTCATCAACCCCGAAACAGTTCCAAAACCATGTTGCGCTCCTACACAACTCCACGCCATCTCCGTCCTGTATTTTGACGACAGCTCCAACGTCATCCTGAAGAAATACCGCAACATGGTGGTCAGAGCGTGTGGATGCCACTAGAGTCCTGTCACACATGCATAGACAATCATTACACCCATATAgacaatgcaa

Function

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0070700 BMP receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-328 Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; fin; neuroepithelial cell; optic cup; and sensory system. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human BMP7 (bone morphogenetic protein 7).

Ensembl:

ensembl_id ENSDART00000138020

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044714 lncRNA downstream 1921 6409743 ~ 6419850 (-) True XLOC_022129
TCONS_00043721 lncRNA downstream 11019 6403207 ~ 6410752 (-) False XLOC_022129
TCONS_00043720 lncRNA downstream 18235 6399839 ~ 6403536 (-) False XLOC_022129
TCONS_00044946 lncRNA downstream 74451 6328231 ~ 6347320 (-) False XLOC_022128
TCONS_00044945 lncRNA downstream 96857 6313582 ~ 6324914 (-) True XLOC_022127
TCONS_00043728 lncRNA upstream 158710 6680809 ~ 6687186 (-) False XLOC_022133
TCONS_00043734 lncRNA upstream 334370 6856469 ~ 6865962 (-) True XLOC_022137
TCONS_00043742 lncRNA upstream 462573 6984672 ~ 6997683 (-) True XLOC_022141
TCONS_00044947 lncRNA upstream 648767 7170866 ~ 7217483 (-) False XLOC_022144
TCONS_00043746 lncRNA upstream 648767 7170866 ~ 7217488 (-) False XLOC_022144
TCONS_00043719 mRNA downstream 67592 6333406 ~ 6354179 (-) True XLOC_022128
TCONS_00043718 mRNA downstream 602779 5768729 ~ 5818992 (-) True XLOC_022126
TCONS_00043716 mRNA downstream 638273 5765514 ~ 5783498 (-) False XLOC_022126
TCONS_00043717 mRNA downstream 638350 5767138 ~ 5783421 (-) False XLOC_022126
TCONS_00043715 mRNA downstream 662529 5756442 ~ 5759242 (-) True XLOC_022125
TCONS_00043725 mRNA upstream 115512 6637611 ~ 6641223 (-) True XLOC_022131
TCONS_00043726 mRNA upstream 126972 6649071 ~ 6660985 (-) True XLOC_022132
TCONS_00043727 mRNA upstream 151347 6673446 ~ 6722101 (-) False XLOC_022133
TCONS_00043729 mRNA upstream 161883 6683982 ~ 6692141 (-) True XLOC_022133
TCONS_00043730 mRNA upstream 214017 6736116 ~ 6749820 (-) True XLOC_022134
TCONS_00043708 other downstream 990254 5431418 ~ 5431517 (-) True XLOC_022121
TCONS_00043707 other downstream 990452 5431196 ~ 5431319 (-) True XLOC_022120
TCONS_00043706 other downstream 1056426 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043705 other downstream 1056587 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043690 other downstream 1496148 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043740 other upstream 439421 6961520 ~ 6982874 (-) False XLOC_022140
TCONS_00043741 other upstream 444233 6966332 ~ 6982916 (-) True XLOC_022140
TCONS_00043747 other upstream 650021 7172120 ~ 7172203 (-) True XLOC_022144
TCONS_00043748 other upstream 688058 7210157 ~ 7210262 (-) True XLOC_022146
TCONS_00043749 other upstream 1059087 7581186 ~ 7581302 (-) True XLOC_022149

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000002_00066136_00130168.mRNA False 1290 mRNA 0.54 7 CI01000002 66136 ~ 130168 (+)
bowfin (Amia calva) AMCG00008176 True 960 mRNA 0.58 7 CM030123.1 44971340 ~ 44983745 (-)