XLOC_022117 (FO904870.1)


Basic Information

Item Value
gene id XLOC_022117
gene name FO904870.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5119732 ~ 5126166 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043704
TCAATTTGACCCTAATgacagaggacaaatgtgggccacagttagcaaaatagtggcatagtcatttaagggtaatctaggtctaaacctaaagtggctcacatgtgtaggtgaaaatgtggcccagttatcttaagacaggCACAGTAAGCCAACAATCCATTCAGTAtatggtccagatgtaagtgtcggGTGTAGGCCacatctgggccagaataaaagcaaactgtggcccagaatagggtcagttctggttcatttggttgaattctggctcatatgtgatattgctatggcttaatagtggcccagatctgacatgtgtatgctaatgcaaatgTATCACTTTTAAATTCGTTTACGCTTCATAATTCTTCTGTGTCTCGTTTCTCCATTCAGAGATCTCACTGGGAATCGACTGAGTAATTTGCCAATGACTGGACTGACAAGTCTTACTCATCTCAAACTGAAAGGCAACATGGCACTGTCACGTTCCTTCGGATTGGAGGACTTCCCCAACATAAGGGTCATCGAGATGCCATATGCCTATCAGTGCTGTGTTTTTGGAGGCTGTAGCAGTTACAGATCTGCCAGCCAGTGGGAAGAACAGATGGGCAGTGAAGAGGAAGATTTCCAGAAGAAATCTCCGTCCCTGTTCCCCATTCACACTGACAACAACTATGACCTTGACTTAGAAGAATTCCAGTTAGCGATTGAAGAGTCCAAGCTACAGACCAGCATACAGTGCACCCCCATACCAGGTAAATTCAATCCACAACAACTCTATTTTTTTGAATGAATGCCACCAAGACTACAAAGGCCTGTTCAAATGAATCAACAATCATGTTAAAGGAAGATGTATTTGCTACAAAAATGTGTCTTGCTCCAGTTACACTCTGAGAGGGACCTGAACTGGAATTTCCTGTATGGGAGTTGGACAAGCTCACAAAGACATGAAATACTTTAGTCTTTAGGTTCAGTCACTAGTGCAGCTCTAAAGGCCATTTTTAGATGGTTTACTCACACAGCTTCTTCtagcctggggtccgttctttgaacctcgcttaaatgatctaagatgatttggcagatcctggatctgttcatctcgATAACTggtctctcgctaatttggttcttcaaacaagttcgcgaatcagattagaatgtctggatgaactgatctgagatcactgcgtgtgttgtgaaggacagatcaaTCAattctcgaaatcatgatcagcaatgcaacgattggcttaatgcgtaatgacatcatctgattaatattcaactatccatgtgagcaaaattacatcaaattagcagtaaaccgtttgttaaatatgacatgcaataaccttccacatttgttgtgagctgcaggctttacactttcatgtgtcaagagtattcatcatgtatttcaatgcatatcagtgtatttagttctacatttagaaaatattttctttattatagtagccgtttttttaatcggtgtaaagaataactggatgtttacaaaagcattttgatattggtaacggtgtctgcaacttttgtgaagcatcaaatcaccggcatattaactgtcaaaacatgtttatgattgcatgtattattgcttttaaaaaaaagtcacatatatgTACTAatagttactatt

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117500

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043704 True 1669 lncRNA 0.40 3 5119732 5126166

Neighbor

gene id symbol gene type direction distance location
XLOC_022116 etv7 coding downstream 17885 5086317 ~ 5101847 (-)
XLOC_022115 kcna2b coding downstream 87145 5009964 ~ 5032587 (-)
XLOC_022114 ngfa coding downstream 144215 4929442 ~ 4975517 (-)
XLOC_022113 taz coding downstream 194008 4915595 ~ 4925724 (-)
XLOC_022112 atp6ap1a coding downstream 204614 4899238 ~ 4915118 (-)
XLOC_022118 NA coding upstream 64611 5190777 ~ 5199754 (-)
XLOC_022119 CR936540.1 coding upstream 84855 5211021 ~ 5365345 (-)
XLOC_022120 dre-let-7a-5 coding upstream 305030 5431196 ~ 5431319 (-)
XLOC_022121 dre-let-7e coding upstream 305252 5431418 ~ 5431517 (-)
XLOC_022122 tnnt2a coding upstream 527058 5653224 ~ 5685172 (-)
XLOC_022102 NA non-coding downstream 1389126 3728090 ~ 3730606 (-)
XLOC_022098 NA non-coding downstream 1668353 3450998 ~ 3451379 (-)
XLOC_022096 AL954726.1 non-coding downstream 2063636 3055981 ~ 3056096 (-)
XLOC_022095 NA non-coding downstream 2127625 2960218 ~ 2992107 (-)
XLOC_022093 NA non-coding downstream 2275478 2842399 ~ 2844254 (-)
XLOC_022127 NA non-coding upstream 1187416 6313582 ~ 6324914 (-)

Expression


Co-expression Network