XLOC_022189 (phactr3a)


Basic Information

Item Value
gene id XLOC_022189
gene name phactr3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12232773 ~ 12345764 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043815
GTAAAGGGTTCCTCTAATTCGGCAATGCCTGCTGCTGGATGCTCTTAGACGCATCCGCCTCACCGACGGCTCCGCTGCCTCCGAAAGGGATTTCATTATTTGACTCACACAAGCTCCTCATGGCTACATCGGACGGAATAGACAAATGTCTTCTGCACAGAGGCAGATCTCAAAGTGACCCGAACATCCTCAGCGAGTCTGGCATCGATCTCTCGCACGGCGCAGATGTGATTGAGCAGCAGAAGGTGCTGCGCTCCAGCTGTTTAGTAAGTGGAGTCCACACTCCTCCCATCCGCCGCCACAGCAAACTGGCAACACTGGGACGCATCTTCAGGCCATGGAAATGGAGGAAAAAGAAAAACGAGAAGCTGAAACAGAGCTCTACAGATGTGGCCTTGGCCTGTGGACTTCACTCTCCAGACCCCAGCGGCCCCATCCAGGGACTCTCCAATTCTGAGATCCGGCTGCCCGGCTCTCAGGGGCCCATCCTCAGCATCAGTAGCATGGAGTACCTCAGCTCAGAGCAAGACAATCTCCCTTGCATGGTAGATTCCTTACAGGACACAGAGCCGACAGAAGACCCAAAATCAAATGAAGAAGAGGGGGACGAGGAGGAGGCCGTTCTCTCTGTGAATGAGAATGAAGACGTTGAGGAAGATGAAGAAGACCAAGAGGAAGATGAAGAGGATGAAGAGCAGGAGCAGTCTCCACCAAACAGCCATGGCAATCTGGTCTCTCAGCTCAGCACTGAGGAAGACGCAGATAAAGTTGTCATCGCATCAGTGCCTCAGTCAAACTCTTTTCTCCAGAAAGAACTGCCTAGAGTCCCTGACGGTCCCAGTCCTGTGGTTCTAAGAGGGCCGTTTTCTGGCTCGCCGCATGTAGGTAGCATACATCCACCGCTGCCCCCTAGCTGTATAATAGAGGAACTGCACCGAGCACTGGCAACAAAGCTCAGGCAGGACAGCATCGAGCGAGAGCCAAGCGGAGACGGTGAGAGCAGAAAGGAAGCAGAGGAAAACAAGGAAAACGTTCGACAGGATCACTGCTTCACTGATGCTTCAGGAATTATCTATGATATCGACAGCTGGAACGACTCTGTCATTTCTGGCACATTGCCAAGGAGGATGAGGAAGGAGCTGTTGGCCGTGAAGCTGCGGAATCGGCCCAGCAAACAGGAGCTGGAGGACAGGAACATATTTCCAGCACGGAGTGACCAGGAGAGACAGGAGATCCGTCAGCAGATTGAAATGAAACTCGCCAAGAGACTCAGTCAGCGGCCGGCCGTTGAAGAGCTGGAGAGCAGAAACATTTTAAAACAGAGGAACGATCAGACGGAACAGGAGGAAAGAAGAGAGATCAAACAGAGACTCAACAGAAAGCTAAACCAGAGGCCAACAGTTGATGAACTAAGAGAAAGAAAGATCCTGATTCGCTTCAGTGACTATGTGGAGGTGGCCAAAGCCCAGGATTATGACAGAAGAGCTGACAAACCCTGGACCAGACTGTCTGCAGCTGACAAGGCGGCCATCCGTAAAGAGCTGAACGAGTTCAAAAGCACTGAGATGGAGGTCCATGCTTCAAGCAAGCATCTAAcaagGTTTCACAGGCCCTAAGAGGGGTTTTTCTTCTGTGAAGAAAATGCTGAATGTGGCGTTTATGTTAAACTCCTGGAGGAGCCTCTTCCAGAGTCGTGGCTTCGTCCATGGGATTCCCTTATTCTTCCAGCGCCATGGGCCAAGTGCTGTTTGGATGTGGTTACGCCAAGAGCTGCGTCTCCACCGCGGGCCGCCCCAGGACCAAACCTGAAGAACATCTGCGGATAGATTTAACCTGAGGCTGACAGGAGTGGAGCGGCAGAGGactttttgatgtttttaaaatggaCTGCAATTTAGTGACTGCTAAGAAAAGAGTAAATGAATCAGTCCTGGATTAATGTTTGTGTACATGTAACCAGCTCCACTctcaaaaattaagtaaaaaaaaaaaacacttgagggTTAATAAGCCTGCTATAAATGAATTTCATACACTGTACAAAAGTCAGTTTGAACAGGGTTGTTCATGTcatcacttgaaaaaaaaaaactttgtaagcACCACTTGTCTTCAAAATacaattttggaaata
>TCONS_00043816
AACAACAGCACAAGTTTCCTCTCAGCACGGGTCCACTTATTTAATCTCATCAGCACCTTCACTTAATACGGGAGGGGGTTCTTAAAAAAGCGGCTCAAACCCCCGCTGTCAGTATTTATCCAGATGAAGAGGAATACCTGTCAGGCTGAACACAAAGGACGGGGAGTTTTTGAGCGTCCCTTCAGGATCTCCCTCACTGCTGGATCTCTCTGAACGggacacttaacagaaataatggtTCAGAATGTGATTCTGGTGTTTTTCCGCAGGAGACTCAGTCAGCGGCCGGCCGTTGAAGAGCTGGAGAGCAGAAACATTTTAAAACAGAGGAACGATCAGACGGAACAGGAGGAAAGAAGAGAGATCAAACAGAGACTCAACAGAAAGCTAAACCAGAGGCCAACAGTTGATGAACTAAGAGAAAGAAAGATCCTGATTCGCTTCAGTGACTATGTGGAGGTGGCCAAAGCCCAGGATTATGACAGAAGAGCTGACAAACCCTGGACCAGACTGTCTGCAGCTGACAAGGCGGCCATCCGTAAAGAGCTGAACGAGTTCAAAAGCACTGAGATGGAGGTCCATGCTTCAAGCAAGCATCTAAcaagGTTTCACAGGCCCTAAGAGGGGTTTTTCTTCTGTGAAGAAAATGCTGAATGTGGCGTTTATGTTAAACTCCTGGAGGAGCCTCTTCCAGAGTCGTGGCTTCGTCCATGGGATTCCCTTATTCTTCCAGCGCCATGGGCCAAGTGCTGTTTGGATGTGGTTACGCCAAGAGCTGCGTCTCCACCGCGGGCCGCCCCAGGACCAAACCT

Function

symbol description
phactr3a Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Orthologous to human PHACTR3 (phosphatase and actin regulator 3).

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005575 cellular_component cellular_component
GO:0004864 protein phosphatase inhibitor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-4 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Orthologous to human PHACTR3 (phosphatase and actin regulator 3).

Ensembl:

ensembl_id ENSDARG00000058243

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043815 False 2134 mRNA 0.50 12 12232773 12345764
TCONS_00043816 True 812 lncRNA 0.49 5 12233100 12245896

Neighbor

gene id symbol gene type direction distance location
XLOC_022188 fam217b coding downstream 74088 12155165 ~ 12158685 (-)
XLOC_022186 AL929345.2 coding downstream 111116 12062294 ~ 12121657 (-)
XLOC_022187 AL929345.1 coding downstream 164539 12068120 ~ 12068234 (-)
XLOC_022185 NA coding downstream 212162 12016703 ~ 12020611 (-)
XLOC_022184 si:dkey-178k16.1 coding downstream 217634 11864223 ~ 12015139 (-)
XLOC_022190 wfdc2 coding upstream 72849 12418613 ~ 12423778 (-)
XLOC_022191 snx21 coding upstream 82961 12428725 ~ 12453700 (-)
XLOC_022192 NA coding upstream 328564 12674328 ~ 12830279 (-)
XLOC_022193 NA coding upstream 330538 12676302 ~ 12832883 (-)
XLOC_022194 si:dkey-96f10.1 coding upstream 336589 12682353 ~ 12788262 (-)
XLOC_022183 CR388030.2 non-coding downstream 645241 11587417 ~ 11587532 (-)
XLOC_022182 CR388030.1 non-coding downstream 700303 11532340 ~ 11532470 (-)
XLOC_022181 NA non-coding downstream 887000 11342604 ~ 11345773 (-)
XLOC_022198 NA non-coding upstream 1215954 13561718 ~ 13565609 (-)
XLOC_022199 NA non-coding upstream 1277755 13623519 ~ 13625585 (-)
XLOC_022200 CR391935.2 non-coding upstream 1290029 13635793 ~ 13635907 (-)

Expression


Co-expression Network