XLOC_022193


Basic Information

Item Value
gene id XLOC_022193
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12676302 ~ 12832883 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044967
aCACAGACACAAGTTCATtaaacatttcagtttaattatcaaaaaacaaataaaacaatctcTTAAAAAACTGACTAAAAATCCATACATCCCTCAGTTCATGACAATCCATTAAGTACAAATCCATCCATTTATCGTGTAGTAGCAGTGCATAAAGCAGAAGCCATTAAACTCTTGTCTGAATGCTCTGTACATCCCTTTTTCTCCCATTGCCACAGTATCCAATGGTGTTTTTGTAGAGCCAACCACAGGATTAACATCTGGAGAGCTTGAACTCCACTCTATATTTGACCAAGTAACAGTGAGGAATGCTCCATCCCCTTCATCATAAACATCTAAAAGAACCTTTCAGAACAGGTCTAATGGTAGCTGAATTAAagacgaaacacacaca

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048333 mesodermal cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0060322 head development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044967 True 394 lncRNA 0.37 2 12676302 12832883

Neighbor

gene id symbol gene type direction distance location
XLOC_022191 snx21 coding downstream 222602 12428725 ~ 12453700 (-)
XLOC_022190 wfdc2 coding downstream 252524 12418613 ~ 12423778 (-)
XLOC_022189 phactr3a coding downstream 330538 12232773 ~ 12345764 (-)
XLOC_022188 fam217b coding downstream 517617 12155165 ~ 12158685 (-)
XLOC_022187 AL929345.1 coding downstream 608068 12068120 ~ 12068234 (-)
XLOC_022195 ndnl2 coding upstream 64995 12897878 ~ 12913131 (-)
XLOC_022196 BX546500.1 coding upstream 93209 12926092 ~ 12931693 (-)
XLOC_022197 CR450832.1 coding upstream 456200 13289083 ~ 13295923 (-)
XLOC_022198 NA coding upstream 728835 13561718 ~ 13565609 (-)
XLOC_022199 NA coding upstream 790636 13623519 ~ 13625585 (-)
XLOC_022185 NA non-coding downstream 655691 12016703 ~ 12020611 (-)
XLOC_022183 CR388030.2 non-coding downstream 1088770 11587417 ~ 11587532 (-)
XLOC_022182 CR388030.1 non-coding downstream 1143832 11532340 ~ 11532470 (-)
XLOC_022181 NA non-coding downstream 1330529 11342604 ~ 11345773 (-)
XLOC_022200 CR391935.2 non-coding upstream 802910 13635793 ~ 13635907 (-)
XLOC_022201 CU929459.1 non-coding upstream 881503 13714386 ~ 13714500 (-)
XLOC_022202 NA non-coding upstream 973476 13806359 ~ 13809597 (-)

Expression


Co-expression Network