XLOC_022257 (nucks1b)


Basic Information

Item Value
gene id XLOC_022257
gene name nucks1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18118535 ~ 18130264 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043940
CATCCCACTTTTACTCATAAAAGAATCCTGGCTTGCAGGCCAGGCAGTAGCTAATTAGTTAGCTACTATTCTACAGGAGGCTTGACCAGGGCAATTCGGCCTGTGGATACTTGAACATTTATCCATTTTCGACCCACACAGACCAAGGCTGCGTGCGAGCAGATGCTCTAGATCGCACTCATTTGCGCGTGTTTAGTGCAGTTTGCATTGCATAGGTAGTTTCGCACAGCTCTGTGCTACAGAAACAGCTTCCCAGCAGCGGGAGACACCTGGATTTCAGCTGCAAAAGTCCAGTTTTACCAATAAAATTGTAGTTTGCAAAAGCAAAAGGCTTTCAGTCTGTCTGCAGAATGGCGAGACCTTCGAGGAATAAAAGGGTTGTTGACTACGCACAATTCCAAGAGTCTGATGATGCAGATGAGGAATATGGAAAAGATTCGGAACGACCTGAGAAGCCGCCTGTAAAGCGCAGTGATGATTCTCGTGTCAAGGACAACAAGAAGGATCACAGCGATGATGACAATGACAATGACTACGGCGAGGACGAGGAAGAGGAGGATGACGGTGGAGATAGTGATTTTGATGCAgaagaggccagcagggggagaCAGGCTACAGCTAAACGGAAAAGGCCTCGAGATGACAGTGATGATGATGGTAAGGTTGTGAAGAAGAAGGGCCGGCAGGTGCGTCAGGCGGCCACAAAAGCTGCGTCCAAACAGAGGGAGATTCTGCTCGGAGATGGAGGAAGTGAGGATGAGGAAGGACAGGGTGAAGAGGAGGAGGATGACAGTGACGTTTACACCGGGGAAGACTCGGGCAGTGATGAAGATTTCATGgtggaggatgatgatgatgacagtgATTATGGCCGACCCAAACGGAGGAACTCAAAAGTGAGCAGAAGAAGCAAAGACAAGAAATCCCCCAAACCCAAGATAAGGGCTTCAGCGACCCGAGGGGCCAAGAAAAGGAGAGGGAAGCGTCAGACGAGGGTGAAGAGAGTGGTGAAGAAGGCCTCACCAAAATCTGAAGATGAAGAGAGCAACAAGGAGgagaaggaagaagaagaggTGCAGGAGGAAGAAAAGAAGGAGTCGCCCGCCGCCAAGAAGAAGAAGGATGAAGAAAGCGGCGCAGAAGGAGAGGAAAACAACGACAACggagaaaaagaggaggagaaggagaatGAGAATGAGACGGAGGAAAAAGACGATGTTTCTGAGGAGGAAGCTCCGTCAGGTGAAGACTGAGCTCTTTGACCTGCCACTGAACGTGTCTGTTATCTGTTGTTCTTTATGAGGAGCTGTAGAATTGATTTCCCACAATGCTCAAAGAGTATTTTGGATGTTTGTTATGTCACTCGGCTTGTAAATACCATATCTCCACCACACAAAATCTGTAAAGTATCATCAGACCTGTCCTAAAAACTCTACGGTTTGGCTTAATACTGAAACGCGATCTTTCATATGAATATTTATCAGTCTTTCAATTTGTCTAGCAATCTATCTGTTTTGTTACAGTCGACCTTCAGTGTATAAATAAAGAAGGACGAAGACGACTTGCCCTGAAAATACAGATTACACTGTAGGTTCTGTATCTCACTTTACGGGCAATGTACAAATTTTGGAAATCTGTTTGAAAAGATCGCTTGTTTGCTCCAAAATGAATCAATTTTTGTGACTTTTAATGTACACAATTTCATCCCAGCGGCGTCAACTGCTGAAAACACAAGCTTCTAATGAACATATATGCTTGTCGTCATGAACTGCACTGGATTTTGTGGCTGCAGTTCAGTCACTCGGTATCCTCGCTACATCAACTGTACGTTACATAGTTCTAGTGCGCTACTTTCACCCACTTTCCGTGCagttatttcttgattcagtCTAGTAAATCAGCTTTCTTTCCCTGTCTGAGCATTTGAACTaagatgactttttttttctatggtCGTATTGAACCTCTTTCATGGTCGGCATGCTTTCATGTACGTGCTTGGCGAAGGGAGTCTGGTGTAAACCTTCAGGATGAGTGACGTCAGAAGTGAGTGAGCTAGTGAAAACCTTATTATTGACCTCTGTGATGCTTCATGTGTGAaattttttaagactattttgaTGCTTCTAGATGCCTTTTTAAAAGAGCAGTCCGTCGAGCCATTAGAATGGCAAACACGAGCTGAATTCAGTGCACACCATCCATAGCTTTCTCAGCTTCATATGACTATTTTTATTGCTTGTATCGCCATCTTAATCTGTAGCCTTTCATTCTATATCATAATTTATCCAAAATAAATGTTCGATTTAATTACGCTATTCTGATTTTTGTAAAATTTGTTTTACaaggaaaaataaaatgtatctttAAAGAAA
>TCONS_00043941
GGATGACAGTGACGTTTACACCGGGGGTATGAAGAGAATTATGTTAGAGCTGAAATGTTTCGAGAAAACATGGACATTTGCAAGCTGATGTTTATGTTTCCTTTTGTCTTCTATCAGAAGACTCGGGCAGTGATGAAGATTTCATGgtggaggatgatgatgatgacagtgATTATGGCCGACCCAAACGGAGGAACTCAAAAGTGAGCAGAAGAAGCAAAGACAAGAAATCCCCCAAACCCAAGATAAGGGCTTCAGCGACCCGAGGGGCCAAGAAAAGGAGAGGGAAGCGTCAGACGAGGGTGAAGAGAGTGGTGAAGAAGGCCTCACCAAAATCTGAAGATGAAGAGAGCAACAAGGAGg

Function

symbol description
nucks1b Predicted to enable double-stranded DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination and interstrand cross-link repair. Predicted to be active in cytoplasm. Orthologous to human NUCKS1 (nuclear casein kinase and cyclin dependent kinase substrate 1).

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005737 cytoplasm cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4544 Predicted to enable double-stranded DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination and interstrand cross-link repair. Predicted to be active in cytoplasm. Orthologous to human NUCKS1 (nuclear casein kinase and cyclin dependent kinase substrate 1).

Ensembl:

ensembl_id ENSDARG00000012777

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043940 False 2375 mRNA 0.44 8 18118535 18130264
TCONS_00043941 True 363 lncRNA 0.47 2 18119854 18122655

Neighbor

gene id symbol gene type direction distance location
XLOC_022256 NA coding downstream 44116 18073715 ~ 18074419 (-)
XLOC_022255 dre-mir-135c-2 coding downstream 55236 18063173 ~ 18063299 (-)
XLOC_022254 zgc:92287 coding downstream 60577 18032569 ~ 18057958 (-)
XLOC_022253 pm20d1.1 coding downstream 88136 18020928 ~ 18030399 (-)
XLOC_022252 pm20d1.2 coding downstream 100589 17993791 ~ 18017946 (-)
XLOC_022258 tafa1a coding upstream 47017 18177281 ~ 18287618 (-)
XLOC_022259 hsd17b10 coding upstream 241784 18372048 ~ 18381361 (-)
XLOC_022260 NA coding upstream 252033 18382297 ~ 18385168 (-)
XLOC_022261 NA coding upstream 256523 18386787 ~ 18415872 (-)
XLOC_022262 sephs2 coding upstream 427945 18558209 ~ 18568522 (-)
XLOC_022251 NA non-coding downstream 232684 17881023 ~ 17885851 (-)
XLOC_022247 NA non-coding downstream 279337 17657994 ~ 17839198 (-)
XLOC_022248 CU570795.1 non-coding downstream 435603 17682818 ~ 17682932 (-)
XLOC_022266 CT027756.2 non-coding upstream 479752 18610016 ~ 18611010 (-)
XLOC_022267 CT027756.1 non-coding upstream 480863 18611127 ~ 18612421 (-)
XLOC_022270 trpc4apb non-coding upstream 629278 18759542 ~ 18777957 (-)

Expression


Co-expression Network