LOC110522505 (LOC106608111)


Basic Information

Item Value
gene id LOC110522505
gene name LOC106608111
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 32534581 ~ 32541487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976120.1
GGTAGGCCCAGTAGGGTAGGAGGGAcctgagtgacgatgagagagcgagataagagacagatgtagagagagagagagagcagagagagagaggggtgagcggTGCACACACATCACTATCAACTGAATTTATATTAGCAAAATACCTCTGGTATTCCAAGCATGGAAGGCAAGTTTTTATCGTCCCCAAAACAATCTGAACGCAAGCCGTCATGATTGGGGGATCAGCCAGATTCCTTGAAAAGTGCTTGTTCGCTGTTTCGGGGGACTCCAACGGAAAAACTCGGTGCTGTCTCTGCTGCCTCAAGTCCTGCTCTCCCGCTCTAATGCCTTGCCCAAGGTTTTGAGAAGCGCTGAGGTGAGTCGTAGGTTGTTGAGCTGCCTGACGAGGAATAGGAGAAAATTGCGGACAGATCAGAAAACTGTTTCCCGAACTCAGGCAGCATGCTGTCCGGTATAGCTACGGATGGCAAGGCGCTCGGAACCGATTCGCACACACAATACCGAATGACGCTGGGTCAAGGCAAAGCGCTAAAGAAAAAAGTTTAACATGATTAAGGGGCAATAAACGGATACGGACAAAGCCTCATCTAAGGTCTCTGGATCCAAATGTCACCCCCCCTGGACGCTGCCCCAGGCGGGGACCAGCAGTGTGTGACGGTGACGGGTGGgtggcgaggagaggagaggaggaggccacAAACACATTGGCTTTCTGCTGCGATTCTGCACTAAATTGGCCCAGGCTGTGTCCTGTCCTGTGAGGACGAGCAGAGAGTGCTCTGGTCTGATATCTCAGCATGAATGGAGTCAGAGTCAACTTCACTTAGAGGACCTGCTCTTCCTAATGAGACCGCTGTCTCTCTTAAAGTTGAGGACTAATCAATTACAGGGGGATTAAGCCTAACCATACGGCTTCTTGTTCTACTGCCCCGTGAAGAAGAGGTGAACTCAGCATTATCAAACTCTTTTAGTGGACTGTTTTTTTTGTCGACTCTTTTGGTGGATTTACTTCAATACTTTCAAAacttttcccttttttttttttttttttttttttgtggtgtgTTGCTTTTTAATTTCTCCAACCCAAGGACATTCCCCTCCTGATTTTACACTATGGAGTTTCAGGCTGGGCTGTGGAATAAAGATTGGGGTTCATTTCTGCGTTTCTGGTTGACAGTCATCCTCAGCCTCAATGTGCACTTCAGCTGCCCTGCCACCTCGTGCCCAGAAGAGTGCCGCTGCGACAAAACCTTTGTTTACTGCAACGAGCGGAGCCTGACATCTGTGCCTCTGGGGGTGACAGAGGGCTACAAGATCCTCTACCTCCACAACAACCAGATCAACAATGCAGGGTTCCCATGGGAACTACACAACGTGGCGTCCGTGGAGACAGTGTATCTCTACGGCAACCAGTTGGACGAGTTCCCCATCAACCTGCCTAAGAACATCCGGGTGCTCCACCTGCAAGAGAACAACATCCAGACCATCTCCAGGGCTGCCTTAGCCCAACTGCCCCGCTTAGAGGAGCTCCACCTGGACGATAACTCCATCTCTACGgttggggtggaggagggggcgtTCCGGGATGCTGTCAGCCTCAAGCTGCTCTTCCTCACCAAGAACCACCTGAGCAGTGTCCCCATTGGTCTCCCAGAGGACCTCACAGAGCTGCGATTAGATGAGAACCGTATCGCCGTCATTGCTGAGGAGGCGTTCCAGAACGTGACACGGCTACAGCGCCTCCTGTTGGATGGCAACTTGTTGACAGACGAGGGCGTGGCCCCGGGGACGTTCCAGGAGCTGTCCAACCTCCGGGAGCTGGCGCTGGCCCGTAACTCTCTGACGTTCCCCCCGCCCCTCCTCCCGACGCAGTCCCTGGTCAAGCTCAGCCTGCAGGATAATCAGATGGACCAAATCCCAGTGACAGCCTTCTCCGGCCTCCAGAGGCTCGAGAGACTGGATATCTCCAATAACCAGCTGCAGACGCTGACACAGGGGGTCTTTGACGGCCTCATCAGCCTCAGACAGCTCACTGTTCGGAACAACCCGTGGCGCTGCGATTGCACCGTCAAATGGGTGGTGGTGTGGCTCAAGTCGCTGCCAGGCTCTATCAACGTGCGCGGTTCAATGTGCCAGAGCCCAGCGAGGGTGCGCGGCATGGCAATCAGAGAACTCACCCTGGATTCTATCCAGTGCCCAGCTGGGACGGACCTCCAGCCCGACCTCTGGCCTACCCTGCGCTCCACGCCCCCGCACCCCCaactccccaccaccaccaccaccaccaccaccaccgccacccTCATTACCTCCTCCATGACCAGCTCTATTCCCACCTTCACAACCTCCTCCTACCCCACatcaccctcccctccccctgccatGCCTCCCCACCCCGCTGGCCCACTGCCCCCCTATGAGGACCCCCTACGGATATCCTTCTATGTGGTCAATGCCTCCTGCATCGAGGTAAGCTGGGCTTCCTACTTCACCGTCACAGCCTACAAGGTGACCTGGGTTAAGATGGGCCAAAGCCTGATGAGTGATGTCAGCCGCGAAAGGACGGTGAGTGGGGAAAGGCGGAAGCTTAGCTTGACCAACCTGGAGCCCAGGTCGGTGTACCGGGTCTGTGTTTATGTGCTGGACACCCTCAACTCCTACCGCCCAGGGGAGGATACAATATGCTCAGACGCCAGAACCAAGTCGACCTCATCCAGCTCCAACAACAACAAGGCCACAGGGTCGGAGGAAGCTCAACAGGACACCAACTCCACTCTCCTTTTGGCCGGGGTGATAGGCGGGGCAGTCCTTGTCGTCCTGGTAATGCTGCTGAGCCTGTTTTGTTGGCACATGCACAAGAAGAGCCGCTCTGAATCGTCCAAGTGGAAATACAACCGTGGCAGGAGAAAAGACGACTACTGCGAGGCGGGGACCAAAAAGGATAACTCTATACTGGAAATGACTGAGACCAGCTTTCAGATAGTTTCCCTGAACAATGAGCAACTTTTGAAAGGTGATTACAGGATTCAGCCCATCTATACACCCAATGGAGGCATCGGCTTCAGAGACTGCCACCTCAGTAACAATAGCTTAGCCTACTGCAAGAGCAGCAACGTTCCCAGCACCGAGTTCTGCCACACGTGATGCTTCTAACAGGATGCTCCCATACCAGTtgtttgagaaaaaaaaatactgtACCATAGATATTTCCAAGTTCTGTCTGCCATGTAATTTATACTGTGGACAGTAATGTGGAATTCTATCAGCTATCTTTTTTACTCTTAGTTAGAAGGAATACAAATGGTTTTCTAATCAGTGGGATTAAATTACAGTAAGTGTTTTTTGCTTaacttcgggatcggtgtcccttctacgggatggttgagctaacgtaggctaatgcgattagcatgaggttgtaagtaacaagacattttcccaggacatagacatatctgatattgtcagaaagctta
>XM_036976121.1
GGTAGGCCCAGTAGGGTAGGAGGGAcctgagtgacgatgagagagcgagataagagacagatgtagagagagagagagagcagagagagagaggggtgagcggTGCACACACATCACTATCAACTGAATTTATATTAGCAAAATACCTCTGGTATTCCAAGCATGGAAGGCAAGTTTTTATCGTCCCCAAAACAATCTGAACGCAAGCCGTCATGATTGGGGGATCAGCCAGATTCCTTGAAAAGTGCTTGTTCGCTGTTTCGGGGGACTCCAACGGAAAAACTCGGTGCTGTCTCTGCTGCCTCAAGTCCTGCTCTCCCGCTCTAATGCCTTGCCCAAGGTTTTGAGAAGCGCTGAGGTCTCTGGATCCAAATGTCACCCCCCCTGGACGCTGCCCCAGGCGGGGACCAGCAGTGTGTGACGGTGACGGGTGGgtggcgaggagaggagaggaggaggccacAAACACATTGGCTTTCTGCTGCGATTCTGCACTAAATTGGCCCAGGCTGTGTCCTGTCCTGTGAGGACGAGCAGAGAGTGCTCTGGTCTGATATCTCAGCATGAATGGAGTCAGAGTCAACTTCACTTAGAGGACCTGCTCTTCCTAATGAGACCGCTGTCTCTCTTAAAGTTGAGGACTAATCAATTACAGGGGGATTAAGCCTAACCATACGGCTTCTTGTTCTACTGCCCCGTGAAGAAGAGGTGAACTCAGCATTATCAAACTCTTTTAGTGGACTGTTTTTTTTGTCGACTCTTTTGGTGGATTTACTTCAATACTTTCAAAacttttcccttttttttttttttttttttttttgtggtgtgTTGCTTTTTAATTTCTCCAACCCAAGGACATTCCCCTCCTGATTTTACACTATGGAGTTTCAGGCTGGGCTGTGGAATAAAGATTGGGGTTCATTTCTGCGTTTCTGGTTGACAGTCATCCTCAGCCTCAATGTGCACTTCAGCTGCCCTGCCACCTCGTGCCCAGAAGAGTGCCGCTGCGACAAAACCTTTGTTTACTGCAACGAGCGGAGCCTGACATCTGTGCCTCTGGGGGTGACAGAGGGCTACAAGATCCTCTACCTCCACAACAACCAGATCAACAATGCAGGGTTCCCATGGGAACTACACAACGTGGCGTCCGTGGAGACAGTGTATCTCTACGGCAACCAGTTGGACGAGTTCCCCATCAACCTGCCTAAGAACATCCGGGTGCTCCACCTGCAAGAGAACAACATCCAGACCATCTCCAGGGCTGCCTTAGCCCAACTGCCCCGCTTAGAGGAGCTCCACCTGGACGATAACTCCATCTCTACGgttggggtggaggagggggcgtTCCGGGATGCTGTCAGCCTCAAGCTGCTCTTCCTCACCAAGAACCACCTGAGCAGTGTCCCCATTGGTCTCCCAGAGGACCTCACAGAGCTGCGATTAGATGAGAACCGTATCGCCGTCATTGCTGAGGAGGCGTTCCAGAACGTGACACGGCTACAGCGCCTCCTGTTGGATGGCAACTTGTTGACAGACGAGGGCGTGGCCCCGGGGACGTTCCAGGAGCTGTCCAACCTCCGGGAGCTGGCGCTGGCCCGTAACTCTCTGACGTTCCCCCCGCCCCTCCTCCCGACGCAGTCCCTGGTCAAGCTCAGCCTGCAGGATAATCAGATGGACCAAATCCCAGTGACAGCCTTCTCCGGCCTCCAGAGGCTCGAGAGACTGGATATCTCCAATAACCAGCTGCAGACGCTGACACAGGGGGTCTTTGACGGCCTCATCAGCCTCAGACAGCTCACTGTTCGGAACAACCCGTGGCGCTGCGATTGCACCGTCAAATGGGTGGTGGTGTGGCTCAAGTCGCTGCCAGGCTCTATCAACGTGCGCGGTTCAATGTGCCAGAGCCCAGCGAGGGTGCGCGGCATGGCAATCAGAGAACTCACCCTGGATTCTATCCAGTGCCCAGCTGGGACGGACCTCCAGCCCGACCTCTGGCCTACCCTGCGCTCCACGCCCCCGCACCCCCaactccccaccaccaccaccaccaccaccaccaccgccacccTCATTACCTCCTCCATGACCAGCTCTATTCCCACCTTCACAACCTCCTCCTACCCCACatcaccctcccctccccctgccatGCCTCCCCACCCCGCTGGCCCACTGCCCCCCTATGAGGACCCCCTACGGATATCCTTCTATGTGGTCAATGCCTCCTGCATCGAGGTAAGCTGGGCTTCCTACTTCACCGTCACAGCCTACAAGGTGACCTGGGTTAAGATGGGCCAAAGCCTGATGAGTGATGTCAGCCGCGAAAGGACGGTGAGTGGGGAAAGGCGGAAGCTTAGCTTGACCAACCTGGAGCCCAGGTCGGTGTACCGGGTCTGTGTTTATGTGCTGGACACCCTCAACTCCTACCGCCCAGGGGAGGATACAATATGCTCAGACGCCAGAACCAAGTCGACCTCATCCAGCTCCAACAACAACAAGGCCACAGGGTCGGAGGAAGCTCAACAGGACACCAACTCCACTCTCCTTTTGGCCGGGGTGATAGGCGGGGCAGTCCTTGTCGTCCTGGTAATGCTGCTGAGCCTGTTTTGTTGGCACATGCACAAGAAGAGCCGCTCTGAATCGTCCAAGTGGAAATACAACCGTGGCAGGAGAAAAGACGACTACTGCGAGGCGGGGACCAAAAAGGATAACTCTATACTGGAAATGACTGAGACCAGCTTTCAGATAGTTTCCCTGAACAATGAGCAACTTTTGAAAGGTGATTACAGGATTCAGCCCATCTATACACCCAATGGAGGCATCGGCTTCAGAGACTGCCACCTCAGTAACAATAGCTTAGCCTACTGCAAGAGCAGCAACGTTCCCAGCACCGAGTTCTGCCACACGTGATGCTTCTAACAGGATGCTCCCATACCAGTtgtttgagaaaaaaaaatactgtACCATAGATATTTCCAAGTTCTGTCTGCCATGTAATTTATACTGTGGACAGTAATGTGGAATTCTATCAGCTATCTTTTTTACTCTTAGTTAGAAGGAATACAAATGGTTTTCTAATCAGTGGGATTAAATTACAGTAAGTGTTTTTTGCTTaacttcgggatcggtgtcccttctacgggatggttgagctaacgtaggctaatgcgattagcatgaggttgtaagtaacaagacattttcccaggacatagacatatctgatattgtcagaaagctta

Function

NR:

description
leucine-rich repeat transmembrane protein FLRT2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976120.1 False 3482 mRNA 0.52 2 32534581 32541487
XM_036976121.1 True 3245 mRNA 0.53 2 32534581 32541487

Neighbor

gene id symbol gene type direction distance location
antiprot1 antiprot1 coding upstream 410739 32121260 ~ 32123842 (+)
LOC118964510 NA coding upstream 442135 32092160 ~ 32092446 (+)
LOC110521080 ints9 coding upstream 452253 32072761 ~ 32082328 (+)
tdrd6 tdrd6 coding upstream 481739 32028040 ~ 32052842 (+)
LOC110522501 LOC106571602 coding upstream 518711 31980595 ~ 32015870 (+)
LOC110520986 NA coding downstream 124801 32666288 ~ 32699603 (+)
rnh1 rnh1 coding downstream 302447 32843934 ~ 32850818 (+)
LOC110520987 NA coding downstream 312570 32854057 ~ 32865131 (+)
LOC118964496 NA coding downstream 369223 32910710 ~ 32912647 (+)
LOC110521081 LOC106571614 coding downstream 423720 32965207 ~ 33118062 (+)
G343776 NA non-coding upstream 9658 32524715 ~ 32524923 (+)
G343734 NA non-coding upstream 51192 32483147 ~ 32483389 (+)
G343679 NA non-coding upstream 105928 32428418 ~ 32428653 (+)
G343531 NA non-coding upstream 225702 32308624 ~ 32308879 (+)
G343529 NA non-coding upstream 227195 32307155 ~ 32307386 (+)
G343813 NA non-coding downstream 11820 32553307 ~ 32553507 (+)
G343845 NA non-coding downstream 32549 32574036 ~ 32574311 (+)
G343861 NA non-coding downstream 45903 32587390 ~ 32587595 (+)
G343879 NA non-coding downstream 57693 32599180 ~ 32599995 (+)
G343910 NA non-coding downstream 75767 32617254 ~ 32617490 (+)
G342707 LOC106608120 other upstream 748375 31785865 ~ 31786206 (+)
G342571 NA other upstream 1083105 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1115325 31417955 ~ 31422086 (+)
G342538 NA other upstream 1151832 31381826 ~ 31382749 (+)
G339928 NA other upstream 3197642 29335369 ~ 29336939 (+)
G343958 NA other downstream 153499 32694986 ~ 32704371 (+)
LOC110521085 LOC100380634 other downstream 930565 33469529 ~ 33489784 (+)
G344647 NA other downstream 1010640 33552127 ~ 33554003 (+)
LOC110522521 NA other downstream 1043491 33584945 ~ 33586386 (+)
LOC110522536 LOC105024319 other downstream 1849486 34390869 ~ 34394175 (+)

Expression


Co-expression Network