XLOC_022518


Basic Information

Item Value
gene id XLOC_022518
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35200692 ~ 35203084 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045063
tggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAGTGTGTTTTTAACAATTTTCATAAGAAATAACACACTTAGTTTACTTAGTATAATATACAcgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTGTCCGGatctgtttctccgcctaacggcgacgtgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACTCCTGACCTGTGCTCGCCTCACGCCCGACATGTTGCTCCACCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaataccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactattgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGACTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgCAGCATACATTGACCTTGCCAGTGTGGACTTTTTTTCTGCAactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaataataaatttttagttgactaatggttattcaattattagggggcagccctagtaatcattagccacttcaacactttaaactgagagattgaactctaatgccaatttgtttttgtctggttattttttaaaatctgctgtTCATGCAACCAGTGACATTCTCTTGTTTGATTTTTAGCACAGGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045063 True 2393 lncRNA 0.39 1 35200692 35203084

Neighbor

gene id symbol gene type direction distance location
XLOC_022517 klf15 coding downstream 4784 35187683 ~ 35195908 (-)
XLOC_022516 BX294434.1 coding downstream 118198 35027177 ~ 35082494 (-)
XLOC_022515 NA coding downstream 432541 34767321 ~ 34768151 (-)
XLOC_022514 tmed4 coding downstream 1213930 33977724 ~ 33986762 (-)
XLOC_022513 CT025912.1 coding downstream 1231704 33968866 ~ 33968988 (-)
XLOC_022519 cpne9 coding upstream 41294 35244378 ~ 35347738 (-)
XLOC_022520 cmtr1 coding upstream 158640 35361724 ~ 35396978 (-)
XLOC_022521 fbxo25 coding upstream 265750 35468834 ~ 35483310 (-)
XLOC_022522 fam110c coding upstream 282953 35486037 ~ 35491587 (-)
XLOC_022523 NA coding upstream 337276 35540360 ~ 35549662 (-)
XLOC_022509 NA non-coding downstream 1461581 33731189 ~ 33739111 (-)
XLOC_022506 NA non-coding downstream 1581846 33608009 ~ 33618846 (-)
XLOC_022504 NA non-coding downstream 1758350 33406774 ~ 33442342 (-)
XLOC_022525 NA non-coding upstream 460768 35663852 ~ 35669221 (-)
XLOC_022530 BX546466.1 non-coding upstream 661642 35864726 ~ 35864853 (-)
XLOC_022532 NA non-coding upstream 817712 36020796 ~ 36051826 (-)
XLOC_022533 BX005254.3 non-coding upstream 878341 36081425 ~ 36088234 (-)

Expression


Co-expression Network