G339562


Basic Information

Item Value
gene id G339562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28656192 ~ 28656552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384293
tcaaactacacacaataccccataatgacaaagcaaaaacaggtttttagaaaatttaGCAaagtactcagtactttgttgaagcacctttggcagcgattacagcctcaagtcttcttgggtatgacgcttcaagcttggcacacctgtatttggggagtttctcccattcttctctgcagatcctctcaagctctttcaggttggatggggagcattgctgcacagctattttcagatctctacagagatgttcaatcaggttcaagtccggtctctggctgggccactcaaggacattcagagacttgtcccgaagccactcctgcattgtcttggctgtgtgattagggttgttgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384293 True 361 lncRNA 0.46 1 28656192 28656552

Neighbor

gene id symbol gene type direction distance location
LOC110522446 bmp2 coding upstream 19679 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 88892 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 693825 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 783214 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 891640 27757433 ~ 27764552 (+)
LOC110521072 plcb1 coding downstream 42515 28699067 ~ 28934753 (+)
LOC110522448 plcb4 coding downstream 301532 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 496922 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 518774 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 526327 29182879 ~ 29186037 (+)
G339376 NA non-coding upstream 83425 28571319 ~ 28572767 (+)
G339362 NA non-coding upstream 103879 28545713 ~ 28552313 (+)
G339334 LOC100194698 non-coding upstream 158430 28491256 ~ 28497762 (+)
G339265 NA non-coding upstream 260090 28395892 ~ 28396102 (+)
G339254 NA non-coding upstream 270302 28385605 ~ 28385890 (+)
G339583 NA non-coding downstream 47579 28704131 ~ 28704994 (+)
G339590 NA non-coding downstream 56411 28712963 ~ 28713614 (+)
G339591 NA non-coding downstream 57349 28713901 ~ 28714105 (+)
G339592 NA non-coding downstream 57659 28714211 ~ 28714439 (+)
G339594 NA non-coding downstream 60090 28716642 ~ 28717062 (+)
LOC118964415 LOC106608050 other upstream 1054636 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1471222 27054628 ~ 27185449 (+)
G336464 NA other upstream 1761355 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 2598501 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 4233461 24420114 ~ 24422731 (+)
G339660 NA other downstream 202164 28858716 ~ 28859155 (+)
G339693 NA other downstream 258047 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 509966 29166518 ~ 29166996 (+)
G339928 NA other downstream 678817 29335369 ~ 29336939 (+)
G342538 NA other downstream 2725274 31381826 ~ 31382749 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004445 LO018238.1 coding NC_007123.7 CM002896.2 2381213 ~ 2401234 (+)
grasscarp (Ctenopharyngodon idella) G346245 NA non-coding CI01000133 null 1581472 ~ 1581776 (-)