G339594


Basic Information

Item Value
gene id G339594
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28716642 ~ 28717062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384330
gagagcgacagagagagagacagatccttaccaagtacaggctaagtgaccaccgattggcaatagaaatatgtattttcctgccatagcctgagggacactgaataataacatctgcatagtaaacagtaacttacttattattactattattgttattactataattattaatgtttactgtagactgttaccattttattgttattatttttgtatttaattttgtattattatttactaccattttatattattatttgctatcatttacaattttgttacaatgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgagtgaccgagagactgagagagagagagagagtgagagagagagagtgaccgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384330 True 421 lncRNA 0.32 1 28716642 28717062

Neighbor

gene id symbol gene type direction distance location
LOC110522446 bmp2 coding upstream 80129 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 149342 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 754275 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 843664 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 952090 27757433 ~ 27764552 (+)
LOC110522448 plcb4 coding downstream 241022 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 436412 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 458264 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 465817 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 622474 29339536 ~ 29348164 (+)
G339592 NA non-coding upstream 2203 28714211 ~ 28714439 (+)
G339591 NA non-coding upstream 2537 28713901 ~ 28714105 (+)
G339590 NA non-coding upstream 3028 28712963 ~ 28713614 (+)
G339583 NA non-coding upstream 11648 28704131 ~ 28704994 (+)
G339562 NA non-coding upstream 60090 28656192 ~ 28656552 (+)
G339597 NA non-coding downstream 6877 28723939 ~ 28724145 (+)
G339598 NA non-coding downstream 7888 28724950 ~ 28725162 (+)
G339600 NA non-coding downstream 11186 28728248 ~ 28728448 (+)
G339601 NA non-coding downstream 14376 28731438 ~ 28731771 (+)
G339605 NA non-coding downstream 32834 28749896 ~ 28766286 (+)
LOC118964415 LOC106608050 other upstream 1115086 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1531672 27054628 ~ 27185449 (+)
G336464 NA other upstream 1821805 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 2658951 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 4293911 24420114 ~ 24422731 (+)
G339660 NA other downstream 141654 28858716 ~ 28859155 (+)
G339693 NA other downstream 197537 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 449456 29166518 ~ 29166996 (+)
G339928 NA other downstream 618307 29335369 ~ 29336939 (+)
G342538 NA other downstream 2664764 31381826 ~ 31382749 (+)

Expression


Co-expression Network