chd1 (chd1)


Basic Information

Item Value
gene id chd1
gene name chd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9694048 ~ 9731133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976723.1
GCAGTTGTAAGAGACTGCAAAAAACATCTTCGTTACGTCACTACCCGGGGTTTCCACACTCAACATCGCTAATGTTACAGAGTGAACTCGACGGCGTCATGGCGGAGACCGGCTGTAGTAGGACCCGCAGCTGAAATGTTATCTACAATCGCTGTCAATTAAATCATATATTGTTTCGAATTCAAAACGGAAAATTAAAAGTGAAACATATTTTTACACTTCTGGAGGAAGAAATCAAGAAACTTGGCTCGAATTCTAGTAAGATCCGTTGGGGCTGCTCACCCCGGCCCgggagctagctagctgtcttTAGCTGCTAGTTCGCTAGccaaagaaaataagaaaaaaggACCACTGAAGTCGGACGGCAGAATCAGACTGGCAGTTCGCCGTAGCTTCAAGGTGAACTGCATCCAACACGTAAACCAGGGCAGCTTGGATTATAACATTTTCTCAGAAGCTCATATATCTGGGACTCTAAGAGATGGCTGGAAGAAGTGAAGATGAGGGTGTGAGCAACAGCAGTGGAGAGTCAAGCAACTCGGACGATGAGTCCGGGTCGGGCTCTGGATCGGGCTCCAGCTCCAGTTCCAGTTCCAGTAGCAGCTCAGGAAGCGGCTCAGGAAGCGGCTCAGACTCCGGCAGCCAGTCCGATTCCGACTCTGGGAAATCCAAGGAGAAGAACGAACCAGAAAACAAAGCCAAGATCGACGGAGCCGAGTTCTGGAAGTCCAACCCCAGTATCCTAGCAGTTCAAAGGTCAGCTATGCTCAGGAAACAGCAActccagcagcagcaacaacaacagagcTCTTCAAACAGTGGATCGGATTCGTCGAGCAGTGAGGATTCGGATGACGACTCGAGTGGAAAGAGAAGAAAATCGGGTTCAGGATCGTCCTCCGGGTCTGGATCGGGTTCTGGAAGTGGTTCCGGTTCTGACTCGTCAGCACAGGAACAGGAGCACAGTGAAGAGTCGGATGATTACGAGCCCAGTCACAAAGTCAAAAGCAGGAAGCTTCCAACCAAgGCCAACGCCAGAAACGGCAAGAAGAGCAATGTGCAGAGGAAAAAACCCTCTGCGGGCTCATCCTCGGACGACGACTACGACGGCAAGAAGTCGTCGTCGAACCAGGGGCCCAGGCGCCAGGCCACGCAGAACGTCAGCTACAAGGAGGACGAGGAGCAGAAGACTGACTCTGACGACCTGGTGGAGGTGTGCGGGGAGGATGTGCCTCCGCCGGACGAGGATGAGTTTGAGACCCTGGAGCGCGTGATGGAGACgcggatagggaggagaggagcGACTGGAGGCACCACCACAGTGTACGCAGTGGAGGCGGACGGAGACCCCAACGCCAACTTCAACCCCAACAAGGAGGCGGGCGAGCAGCAGTACCTGTTCAAGTGGAAAGGCTGGTCCCATATCCACAACACCTGGGAGACGGAGGAGACGCTGAAGCTGCAGAACGTCAAGGGCATGAAGAAACTAGACAACTTCAAGAAGAAGGAATCGGACAAGAAGAAATGGATAAAATGTTCTTCACCAGAGGATGTGGAATACTTCAACTGTCAACAGGAACTCATGGACGACTTACACTCACAATATCAGCTGGTGGAGAGGATCATTGGGCATTCAAATCAGAAGTCAGCGGCCGGTTTTCCGGACTACCTGTGCAAGTGGCAGGGCCTGTCGTACTCCGAGTGCAGCTGGGAGGACGGAGCCCTCATCTCCAGAAAGTACCAGAAGAGCATAGATGACTATAtgcgcagaaaccagtccaagaCCATTCCCTCCAGAGACTGCAAGGTGTTGAAACAGAGGCCGAGATTTATTCCCATGAAGAAACAGCCGTCCTATATCGGTGGAGAAGGACTGCAGCTCCGAGACTACCAGTTAGACAGCTTGAACTGGATGGCTCACTCATGGTGCAAGGGGAACAGTTGCATCCTGGCAGATGAGATGGGCCTGGGAAAAACCATCCAGACCATCTCCTTCCTCAACTACCAGTTCCATGAACACCAGCTGTACGGACCATTCCTGCTGGTGGTGCCCCTGTCCACGCTCGTCTCCTGGCAGAGAGAGATCCAACTGTGGGCCCCGCTCATGAACGTGGTGGTCTACCTGGGTGACATTAGCAGCCGGGGCATGATCAGAACACATGAATGGATGCACGTTCAGAACAAGAGACTCAAGTTTAACATCCTGCTAACAACATATGAAATTCTCCTAAAAGATAAGGGATTCCTGGGGAATGTGCCATGGGCCTTCATCGGCGTGGATGAGGCCCACCGGCTGAAGAACGACGACTCGCTCCTTTATAAGACCATGATGGACTTCAAGTCCAACCACCGGCTGCTCATCACCGGCACGCCGCTGCAGAACTCACTCAAAGAGCTCTGGTCCCTGCTGCACTTCATCATGCCCGAAAAGTTCCACTCGTGGGAGATATTTGAGGAGGAACATGGGAAGGGTAGGGACTCTGGCTACACCAGTCTACACAAGGAGCTGGAGCCCTTCCTGCTGCGTAGAGTCAAGAAGGATGTGGAGAAGTCTCTTCCTGCTAAAGTGGAGCAGATCCTCAGAGTGGAGATGAGCGCCATTCAGAAACAGTACTACAAGTGGATTTTGACGAGGAACTACAAGGCCCTGAGTAAAGGTACCAAAGGTAGCACGTCTGGCTTCCTTAACATCATGATGGAGCTGAAGAAGTGCTGCAATCACTGCTATCTCATCAAGCCCCCGGAGGACAGCGAGTTCTACAACAAACAGGAGGCCTTACAGCACCTAATCCGGAGCAGTGGGAAGCTGGTGCTGCTGGACAAGCTGCTGCTGCGTCTGCGGGAGCGTGGCCACCGTGTGCTCATCTTCTCCCAAATGGTCCGGATGCTGGACATCCTGGCCGAGTACCTGAAGAGCCGCCAGTTCCTCTTCCAGAGATTGGACGGCTCCATCAAGGGAGAGATGAGGAAACAGGCGCTGGATCATTTCAACGCTGAGGGCTCTGAGGATTTCTGCTTCTTGTTGTCAACGCGGGCGGGCGGTCTGGGCATCAACCTGGCGTCGGCCGACACGGTGGTCATCTTTGACTCTGACTGGAACCCACAGAATGACCTGCAGGCCCAGGCCAGAGCCCACAGGATTGGCCAGAAGAGACAGGTGAACATCTACCGCCTGGTGACTAAGAGCTCGGTGGAGGAGGAGATCATTGAGCGGGCCAAGAAGAAGATGGTGCTGGACCATCTAGTCATCCAGAGGATGGACACCACGGGCAAGACGGTCCTCCACACCGGCACCGCCCCCTCCAGTGCCACTCCGTTCAACAAGGAGGAGCTGTCGGCCATTTTGAAGTTTGGTGCCGAGGAGCTGTTCAAGGAGCAggagggggaggagcaggagcCTCAGGATATGGACATCGACGATATCCTGAAGAGAGCCGAGACCAGAGAGAATGACCCCGGCCCCTCCACTGTTGGAGAGGAGCTGCTCTCACAGTTCAAGGTGGCCAACTTCTccatgatggaggaggaggagatcgTCATGGATTCTGAGCGCCACCATCGGGGCTGGGATGACATCATCCCCGAGGAGCAGCGGCGgcggatggaggaggaggagaggcagaaagAGCTGGAGGAGATCTACCTGCTGCCCCGCATGAGGAACTGTGCCAAACAGGTCAACTTTAACGGCAGTGAGAGCCGGCGTAGTAGAAACAGACGGTATTCCGGCTCCGACAGCGACTCCGTCTCGGATCGCAAGAGGCCCAAGAAACGAGGACGACCTCGGACCATTCCACGAGAAAACATCAAGGGCTTCAGCGATGCTGAGATACGAAGATTTATCAAAAGCTACAAAAAGTTTGGTGGACCACTTGAAAGACTGGATGCTATTGCCCGTGATGCCGAACTAGTGGACAAGTCTGAACATGACCTGAAGCGTCTGGCGGAGACGGTTCACAACGGCTGTCTGAAGACTCTCCGGGAGAACCCCTGTGGACCAGAGAAGACGTCAGGAGGCAGAAGAGGGAAAGTGAAAGGCCCTACGTTCAGGATCTCGGGAGTCCAGGTGAACGCCAAGCTGGTGATCTCCCACGAGGAGGAGCTGGCGCCGCTCCACAAAGCCATTCCTGCCGACCCCGATGAGAGGAAGAGGTACACAATTCCATGCCACTCCAAGGCAGCACACTTTGACATTGATTGGGGCAAGGAGGACGACTCTAGCCTGCTCATAGGAATCTACGAGTATGGTTACGGCAGCTGGGAAATGATTAAAATggaccctgacctcaacctgacaCATAAGCTCCTACCAGACGACCCTGACAAGAAGCCGCAGGCCAAGCAACTGCAGACGAGAGCAGACTATCTTATCAAATTACTGAGCAAGGACCTGGCCAAAAAGGAAGCACAGAGGCAAGCAGGGACGgcCAATTGGAGGAAGAGGAAACCGAGGAGTAAGAAGACCAAAGCTGTGAAGCCAGCCAAGGTGGACGAAGTGGTGAAGAGTCCGTCCTCTACGCCCCACTCAGACAAGTCCTCCGAGGACGAGATTGAGGAGGAAAAGGAGGTGGTCCCGGTAAAGCTGCCACCCAGAAGGGGTCGAACGGAGCGCGTGGTGGTGAAGGAGGAGCCTGAGCCAGAGGAGGAGCCTGagccagaggaggagaaggagcccAAAGAAAGGGAGATGAAGAAAGAGGTTAAAAaggagaagaaagaagagagCCGCGAGGTGAAAGAGAAGGACCTGAAAGAGAAGAAAGAAACCAAGCCCGTGGATCCAGTACATGAACAGGAAGAGGTCACAGGGGAGAAGCCGAGCGAGGTGAAGACTGAGGTACGGGAGAAGGTGAAGAAAACTTGTGACACTCCGGTCCACATCACAGCAGGGGGAGAGAACATCTCGGAGGAGTCGGAGGAACTGGACCAGAAGACCTTCAGTGTGTGTAAGGAGAGGATGCGACCGGTCAAGGCGGCCCTGAAGCAGCTGGACCGTCCGGAGAAGGGCCTGTCGGAACGCGAGCAGCTGGAGCACACGCGCCAGTGCCTCATCAAGATCGGAGACCACATCACCGAGTGTCTGAAGGAGTACTCCAACCCCGAGCAGATCAAACAGTGGAGAAAAAACCTGTGGATATTTGTTTCAAAATTTACAGAATTTGATGCAAGAAAATTGCATAAACTGTATAAGCACGCAATCAAGAAAAGACAAGAGAACGCTCAGGCAGCAGATGGGATCACTAGCACTGTAAATACCCATGGCTTTAAACATGCAGACATCGAGAGGCTGAAGGACAACTCTCACCACGAcgacagcagcagggacagctACAGCTCTGAAAGGCATCACTCGGCGTCGCGCTACCATGAGGACCGCGACAGCCGGGACAGGCACACCTCCGACCCCTACAGTAGGATGTCGGGGAGCGGGGGGGACTCCAGGAAGAGACCCTACTCGGCCTTCAGCAATGGCAAAGACCACAGAGACCACTACAGGTCAGACCGGCAGGACAGCAGATACTACAGCGACAGTAAGCACAGGAAGGTGGACGAGCACCGGTCAGGCCGAGACGGACGGATGGACGGCAAGGAGCGCTCCCACTCAGACCACCGCTCCCATTCCGAACACCACTCGGGCTCCGACTACTCATCGGGCCACCACAAGTCGTCATCGCGAAGTGACTCCTACCGCTACCACGCAGACTGGCAGATGGACCAACGGGCATCGGCCAGCGGTCCCCGTTCGCCGCGTGACCAACGCTCGCCACGCGACCAGCGCTCGCCTTACGACGGACGCTCGCCGTTAGGCCATCGGTCGCCCTTCGAGTACTCGTCAGACCACAAGAGCACGCCGGAGCAGATCTGGAGCAGCCGCAAGACATAACCGCCAGCGTCGGCCTGGGCTGGAGGAGCTAGCCTAGCGGGGAGAGTATCAGCCATAGACATGCGTTGAACACAGGAAATGCCTTATGGGGACTGTGGAAGTAAACAAAGCTGTACTACGCACTGTATCTGTGGTGTCCTAACTCCAACGGTGGACCACGTCCCAGGAACGATGGCGGTGGGAGCGGGTTGGCAGACAAATtgcatatttttgtatttaagaGTTAAAAGCTGTGCCATCGGTGTCGCAGCATAGTTtcttttattatttttataaaaTGGACGCCTTTTTTTACTCCAACGGACACAAATACCCTCGAGTGCTGTCTCACCAACCCACGACACTGGATCCTGCTATTGACTGTTTGTCTCTCTCACGTTTTAATGTGGTTTTCACGTTTATTTAAAGAAGTGTTTAAATCAAGAAGAAAAGTAACGTTTATGTATTTCTCTCATAATCATGCTAAGAGTGGATGTAAGGGTCTCGTCAAAAAGCAGTCTGAATGACTTGGGCTCACCTTCCAAAGTACCTCGTTTACAGTGTTTCTAGTGACCACCTTGACGATCTGTTTTTCTTTTTTGCATCATGCTTTAATTATTTAATTTCTGCCTCCGCTGTAAAATAACCAGGATTTTTTTTGTGAGCAATTTAAAATGTCCCTTTTCACGAATTATACTACTGTAAATTATTGTAAAATAGTAAATCAATGGGCTTTTTTCTTCTCAGGCTCTTTTGGGTTTGTTATTACAACTCTTACCTTTCCCCATCAACTCAGGCTTTTTTGTCCGTTTTAAATGTCAGTTTCGTACAACACTTAACTTTAATGATAAATGCTATTCAGAATAACTTTGGTAAACGGGGAAATATTCTATTAGTTCATTATTCCCCTAGagcaggggtactcaactcttcGCCTACctaggtccagagcctgctggctttctgttctacctgataattaattgcacccacctggtgtcccaggtctaaatcagtccctgattagaggagaagaATGAAAAAAAGCAGTGAACTAGCttggaggtccagagttgagtttgagggctctaGAGCAACttctttgtttatttgtttattttgtgAATTCTGTTGTGAATACATGTTGGAATAGACGAGTTGAAAGCTCAAGTTTTACTCAGACATGTCGTGGAAAACCAGGAGGGGTCTATCAAATACAATACGCCTGTAAGATCTCAAATAAACTAGTCTTTTTACAGAAatcattttttctttttttttttaacataggCAATAATGTCAAATCTTCTATGCAGCCAAGTGTATTTCTGGTGAACAGCCGGAGTGAAGCTGCTGTTACAGTTCAGTtgtacatagatttttttctCTATATTTCAAAATGAATTTACACTGAAAATGCATGGATTTTTAAGATCATTGTTTTATATAGTTTATAAAGTCATTAAACTCAATCACTGTACTCACTT

Function

symbol description
chd1 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and prostate cancer. Orthologous to human CHD1 (chromodomain helicase DNA binding protein 1).

NR:

description
chromodomain-helicase-DNA-binding protein 1

GO: NA

KEGG:

id description
K11367 CHD1; chromodomain-helicase-DNA-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976723.1 True 7353 mRNA 0.51 37 9694048 9731133

Neighbor

gene id symbol gene type direction distance location
LOC110522837 tmem217 coding upstream 2052 9690509 ~ 9691996 (+)
st8sia4 LOC100135820 coding upstream 16557 9659812 ~ 9677491 (+)
pdzph1 LOC106571915 coding upstream 390877 9287057 ~ 9303171 (+)
LOC110523155 diras2 coding upstream 490194 9198915 ~ 9203854 (+)
auh auh coding upstream 595046 9048724 ~ 9099002 (+)
dcp2 dcp2 coding downstream 51322 9782455 ~ 9797823 (+)
ca9 LOC106571618 coding downstream 79591 9810724 ~ 9834173 (+)
LOC110523166 LOC106571594 coding downstream 139494 9870627 ~ 9874229 (+)
LOC110523169 NA coding downstream 377739 10108872 ~ 10124536 (+)
ankrd55 ankrd55 coding downstream 531572 10262705 ~ 10281350 (+)
G365093 NA non-coding upstream 7086 9635188 ~ 9686962 (+)
G365109 NA non-coding upstream 12479 9678974 ~ 9681569 (+)
G364942 pam non-coding upstream 178909 9511683 ~ 9515139 (+)
G365001 NA non-coding upstream 213048 9477926 ~ 9481000 (+)
G364932 NA non-coding upstream 238983 9454357 ~ 9455065 (+)
G365077 reep5 non-coding downstream 43732 9774865 ~ 9775577 (+)
G365175 NA non-coding downstream 71485 9802618 ~ 9802835 (+)
G365190 NA non-coding downstream 109442 9840575 ~ 9840959 (+)
G365194 NA non-coding downstream 115059 9846192 ~ 9846403 (+)
G364850 NA other upstream 464817 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 847932 8775134 ~ 8849107 (+)
G362662 NA other upstream 1774483 7918922 ~ 7919565 (+)
G362554 NA other upstream 2001534 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 2504229 7185926 ~ 7189819 (+)
G365197 NA other downstream 117570 9848703 ~ 9849154 (+)
G366748 NA other downstream 1245549 10976682 ~ 10977152 (+)
G366973 NA other downstream 1694509 11425642 ~ 11428710 (+)
G367684 NA other downstream 2147196 11878329 ~ 11880035 (+)
G368440 NA other downstream 3377563 13108696 ~ 13109134 (+)

Expression


Co-expression Network