LOC110523166 (LOC106571594)


Basic Information

Item Value
gene id LOC110523166
gene name LOC106571594
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9870627 ~ 9874229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976730.1
cggcgacgacaaccgccgagcgccacccgaacgggaaggggagccacctttggtcggactcgtgacaataGGGAAAGTGGGAAAGTCAACACTGACCATGATCCACTCGAAATTCATCACCAAACCGGGAGGTGGCAGAGACCATTATAGAGAAACAAGTTTGACGGATTCAGATAAAATGGCTTGCGAATCGACTCTCCCAGAGGAGGATCTATCCTGTCCTGTGTGCTGTGACATCTTCAAGGATCCTGTTCTCCTGTCTTGTAGCCACAGCTTCTGTAAAGCCTGTCTGCAGGAATTCTGGAAAGAGAAGGAATGGCAGGAGTGTCCAGTTTGCAGGAGAAGATCGTCAAGGTCTGAGCCTCCCAATAACCGGGCTCTTAAGAACCTATGTGAGGCCTTCTTACAGGAGAGGCGTCAGAGAGCTTCAGCAGGGTCTGCGGTGCTCTGCAGTCTGCATGGAGAGAAACTCAAGCTCTTCTGTCTGGAGCATAAACAGCCTATCTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATTCCCATAGATGAAGCTGTACAGGATCTTAAGGAGGAACTCGAGCCTACCCTGAAGTCCTTACAGGAGAAATTGGAAGTCTTTAAGAAAGTCAAACTCACTTGTGATAAAACAGCACAGCATATCAAGAGTTCAAGTGCTCTCTGTCTCCAGAGCCAGGCTAAGGACACAGAGAAAACGATTAAGGAGGACTTTGAGCGGGTTCACCAGTTTCtacgagaggaggaggaggccaaGATAGCTGccctgagggaggaagaggagcagaaGAGTCAGACAATGAAGGTGAAGATTGAAGAGATGAGTGGACAGATATCATCACTTTCAGACAAAATCAAAGCCATAGAGAAAGAGCTGGAAGCTGAAGACATCTCATTCCTGCAGAACTACAATGCCACAATGAAAAGAACCCAATGCCCACTGCCTGATCCTGTGAGGGTTTCAGGAGCGCTGATAGATGTGGCAAAACACCTGGGCAACCTCATGTTCAGAATCTGGGAGAAAATGAAGGAGATTGTTCAATACAcGCCGGTGGTTCTGGACCCTAATACTGTGCACTCAAAGTGCGTGACGGTCTGAGGATTTTACCAGCGAGGGCCTCTATAACAGTGGAACAGCACATTTAGGGCTGCTGGAAAACGTGTGGTGAGCTGGCATTTACCCCAGTCAGTTTCATCGGGTTTTGCAACACCCTACTACTGTTAATTTGAAATAATAAAAATATTGACAAAGTGTGGAAA
>XM_036976729.1
ggcgacgacaaccgccgagcgccacccgaacgggaaggggagccacctttggtcggactcgtgacaataGGGAAAGTGGGAAAGTCAACACTGACCATGATCCACTCGAAATTCATCACCAAACCGGGAGGTGGCAGAGACCATTATAGAGAAACAAGTTTGACGGATTCAGATAAAATGGCTTGCGAATCGACTCTCCCAGAGGAGGATCTATCCTGTCCTGTGTGCTGTGACATCTTCAAGGATCCTGTTCTCCTGTCTTGTAGCCACAGCTTCTGTAAAGCCTGTCTGCAGGAATTCTGGAAAGAGAAGGAATGGCAGGAGTGTCCAGTTTGCAGGAGAAGATCGTCAAGGTCTGAGCCTCCCAATAACCGGGCTCTTAAGAACCTATGTGAGGCCTTCTTACAGGAGAGGCGTCAGAGAGCTTCAGCAGGGTCTGCGGTGCTCTGCAGTCTGCATGGAGAGAAACTCAAGCTCTTCTGTCTGGAGCATAAACAGCCTATCTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATTCCCATAGATGAAGCTGTACAGGATCTTAAGGAGGAACTCGAGCCTACCCTGAAGTCCTTACAGGAGAAATTGGAAGTCTTTAAGAAAGTCAAACTCACTTGTGATAAAACAGCACAGCATATCAAGAGTTCAAGTGCTCTCTGTCTCCAGAGCCAGGCTAAGGACACAGAGAAAACGATTAAGGAGGACTTTGAGCGGGTTCACCAGTTTCtacgagaggaggaggaggccaaGATAGCTGccctgagggaggaagaggagcagaaGAGTCAGACAATGAAGGTGAAGATTGAAGAGATGAGTGGACAGATATCATCACTTTCAGACAAAATCAAAGCCATAGAGAAAGAGCTGGAAGCTGAAGACATCTCATTCCTGCAGAACTACAATGCCACAATGAAAAGAACCCAATGCCCACTGCCTGATCCTGTGAGGGTTTCAGGAGCGCTGATAGATGTGGCAAAACACCTGGGCAACCTCATGTTCAGAATCTGGGAGAAAATGAAGGAGATTGTTCAATACAcGCCGGTGGTTCTGGACCCTAATACTGTGCACTCAAAGGTACTCTGCTCCATGACCTGGATGGGGTATGATGATTGCTTTGTATGGGGTGGTGAGTTCCAGGAGCGTCCTGACAACCCAGAGAGGTTAGCCCAGGGATGGGCCATGGGCTCTGAGGGCTTTACCTCAGGGACACACAGTTGGGACATTGAGATTGATGACGAGTATTGGTTTGCAGGTGTGGCCACTGAGTCTGTCAATAGGTCTGATCCTAGAGATGAAGTCTGGGGTGTTAGCCATGTTGATAGTTTTAATACAGATTATAAGGAAGACTTTGATTATGTATATAAAGTAAGTTGCCCAAATACTGAAACCATTTACCTCCCTGTGAGACACAACTCCAGAGTTAAGGACAGGATCAGAGTTCAgctggacagggacagaggagagCTATCATTCTACGACATTGATAatgacacacatatacacacacgcacacacgcattcACTGGGagaatatttccatttttttcagTGCGTGACGGTCTGAGGATTTTACCAGCGAGGGCCTCTATAACAGTGGAACAGCACATTTAGGGCTGCTGGAAAACGTGTGGTGAGCTGGCATTTACCCCAGTCAGTTTCATCGGGTTTTGCAACACCCTACTACTGTTAATTTGAAATAATAAAAATATTGACAAAGTGTGGAAA
>XM_021601608.2
gacgacaaccgccgagcgccacccgaacgggaaggggagccacctttggtcggactcgtgacaataGGGAAAGTGGGAAAGTCAACACTGACCATGATCCACTCGAAATTCATCACCAAACCGGGAGGTGGCAGAGACCATTATAGAGAAACAAGTTTGACGGATTCAGATAAAATGGCTTGCGAATCGACTCTCCCAGAGGAGGATCTATCCTGTCCTGTGTGCTGTGACATCTTCAAGGATCCTGTTCTCCTGTCTTGTAGCCACAGCTTCTGTAAAGCCTGTCTGCAGGAATTCTGGAAAGAGAAGGAATGGCAGGAGTGTCCAGTTTGCAGGAGAAGATCGTCAAGGTCTGAGCCTCCCAATAACCGGGCTCTTAAGAACCTATGTGAGGCCTTCTTACAGGAGAGGCGTCAGAGAGCTTCAGCAGGGTCTGCGGTGCTCTGCAGTCTGCATGGAGAGAAACTCAAGCTCTTCTGTCTGGAGCATAAACAGCCTATCTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATTCCCATAGATGAAGCTGTACAGGATCTTAAGGAGGAACTCGAGCCTACCCTGAAGTCCTTACAGGAGAAATTGGAAGTCTTTAAGAAAGTCAAACTCACTTGTGATAAAACAGCACAGCATATCAAGAGCCAGGCTAAGGACACAGAGAAAACGATTAAGGAGGACTTTGAGCGGGTTCACCAGTTTCtacgagaggaggaggaggccaaGATAGCTGccctgagggaggaagaggagcagaaGAGTCAGACAATGAAGGTGAAGATTGAAGAGATGAGTGGACAGATATCATCACTTTCAGACAAAATCAAAGCCATAGAGAAAGAGCTGGAAGCTGAAGACATCTCATTCCTGCAGAACTACAATGCCACAATGAAAAGAACCCAATGCCCACTGCCTGATCCTGTGAGGGTTTCAGGAGCGCTGATAGATGTGGCAAAACACCTGGGCAACCTCATGTTCAGAATCTGGGAGAAAATGAAGGAGATTGTTCAATACAcGCCGGTGGTTCTGGACCCTAATACTGTGCACTCAAAGGTACTCTGCTCCATGACCTGGATGGGGTATGATGATTGCTTTGTATGGGGTGGTGAGTTCCAGGAGCGTCCTGACAACCCAGAGAGGTTAGCCCAGGGATGGGCCATGGGCTCTGAGGGCTTTACCTCAGGGACACACAGTTGGGACATTGAGATTGATGACGAGTATTGGTTTGCAGGTGTGGCCACTGAGTCTGTCAATAGGTCTGATCCTAGAGATGAAGTCTGGGGTGTTAGCCATGTTGATAGTTTTAATACAGATTATAAGGAAGACTTTGATTATGTATATAAAGTAAGTTGCCCAAATACTGAAACCATTTACCTCCCTGTGAGACACAACTCCAGAGTTAAGGACAGGATCAGAGTTCAgctggacagggacagaggagagCTATCATTCTACGACATTGATAatgacacacatatacacacacgcacacacgcattcACTGGGagaatatttccatttttttcagTGCGTGACGGTCTGAGGATTTTACCAGCGAGGGCCTCTATAACAGTGGAACAGCACATTTAGGGCTGCTGGAAAACGTGTGGTGAGCTGGCATTTACCCCAGTCAGTTTCATCGGGTTTTGCAACACCCTACTACTGTTAATTTGAAATAATAAAAATATTGACAAAGTGTGGAAA

Function

NR:

description
tripartite motif-containing protein 35-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976730.1 False 1290 mRNA 0.48 8 9870627 9874229
XM_036976729.1 False 1764 mRNA 0.47 7 9870628 9874229
XM_021601608.2 True 1737 mRNA 0.47 7 9870631 9874229

Neighbor

gene id symbol gene type direction distance location
ca9 LOC106571618 coding upstream 36454 9810724 ~ 9834173 (+)
dcp2 dcp2 coding upstream 72804 9782455 ~ 9797823 (+)
chd1 chd1 coding upstream 139494 9694048 ~ 9731133 (+)
LOC118964779 NA coding upstream 145062 9725438 ~ 9725565 (+)
LOC118964774 NA coding upstream 158658 9711751 ~ 9711969 (+)
LOC110523169 NA coding downstream 234643 10108872 ~ 10124536 (+)
ankrd55 ankrd55 coding downstream 388476 10262705 ~ 10281350 (+)
gp130 gp130 coding downstream 408771 10283000 ~ 10300246 (+)
slc38a9 slc38a9 coding downstream 467003 10341232 ~ 10366701 (+)
LOC110523175 LOC106571461 coding downstream 527866 10402095 ~ 10420627 (+)
G365205 NA non-coding upstream 12507 9854746 ~ 9858120 (+)
G365202 NA non-coding upstream 19275 9851143 ~ 9851352 (+)
G365196 NA non-coding upstream 22335 9848080 ~ 9848292 (+)
G365195 NA non-coding upstream 23548 9846874 ~ 9847079 (+)
G365194 NA non-coding upstream 24224 9846192 ~ 9846403 (+)
G365223 NA non-coding downstream 4302 9878531 ~ 9878767 (+)
G365199 NA non-coding downstream 5033 9879262 ~ 9881261 (+)
G365198 NA non-coding downstream 11085 9885314 ~ 9911145 (+)
G365233 NA non-coding downstream 37156 9911385 ~ 9911700 (+)
G365235 NA non-coding downstream 37792 9912021 ~ 9913862 (+)
G365197 NA other upstream 21473 9848703 ~ 9849154 (+)
G364850 NA other upstream 641396 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 1024511 8775134 ~ 8849107 (+)
G362662 NA other upstream 1951062 7918922 ~ 7919565 (+)
G362554 NA other upstream 2178113 7690440 ~ 7692514 (+)
G366748 NA other downstream 1102453 10976682 ~ 10977152 (+)
G366973 NA other downstream 1551413 11425642 ~ 11428710 (+)
G367684 NA other downstream 2004100 11878329 ~ 11880035 (+)
G368440 NA other downstream 3234467 13108696 ~ 13109134 (+)
G369763 NA other downstream 3891018 13765247 ~ 13769296 (+)

Expression


Co-expression Network