depdc1b (depdc1b)


Basic Information

Item Value
gene id depdc1b
gene name depdc1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10984720 ~ 11004641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601662.2
TTGCTCAGATGTGACGCTCGAGATTCAAAGTTGGTCAGCGAGGCGTAGCTAGGCTAGCTTCTCAATGGCATGTTATGTTTTCAGCAGTAACGATAGTCTGCATTAATATTTGGTAGAATCTCTCGTTTATGAAAGTTGTGTaacttttgtgtgtgttattggaCCAGAATGGAAGGTAAAATGATCGGACCGGGTCCATACAGGGCAACGAAGTTGTGGAATGAAACTATCAAGCTCTTCCGTGGAGGCATGCCTCTGAAAAGACACTGGGCATACTTCCGTAGCTATGACAACAGCTTCACTGGATCTGAGGCCGTTGATTGGCTACATGAGCTGCTAAAGCGAAATCATAACTTTGGGCCAGAGGTGACCCGGTACCAGACCCTGCAACTGCTCAGGAAATTCATGAAGAACCACGTCGTTGAGGATGTCAAGGGCCGCTATGGTAAAGAAGACTTTGAGGACAGTGGTCAAGTCTACAGGTTCCCTCCTACGTCCCCCCTGAAGCCCCTGCCCCAGCGGACCCCAGTGTCAGAGAACTGCGACCTGCCCCGCCTCATCCGCTGGGACGACTACGAGGAACTGCCGCAGCCAGAGAAGATCCCCATGAAGTCTCTGATCCTGAACTCAGAGACGTGGAACAAGAGACACAGCATAGCCATTGGAGAGGTGCACGAGTGCAAAATCATACGTAGGAGTGACATCACCCCCAAGCAAGTCGACCAAATCTGGAAGAAAATGACAATCGCACATTTGCAGAGAGTGCTGGGTCTGAAGACAATGGATGGAGTGTTGGATCCCAAACACGTGAATGCAAAGCATATAATTCACAACGTATTCAGTGTCAATAAAACAGGAATAGTTATTGTGAAGAACAAAGCGGAGGACATGCCCTATTGGGTTCTATCAGCAATGAAGTGCCTAGCCAACTGGCCCAACGGTAGGGAGACCAAGCAGCCCATGTACCCAGGCTTTGAGCGTGATGTGCTCCGTACGGTGGCTGAGTACTTCCAGAGACTCAAAGAGCCCCTATTGACCTTCCAGCTCTATGAAGTCTTTGTCAACATTCTCAGTCTGCTGCAGCAGAAAGAGGTGGCAGCAGAGGCCCTCCAGGTGTGCAGCCTCCTCCTGCCACCGGCCAACCGCCGCAGACTCCAGCTGCTCCTCCGCCTCATGGCCAGGGTCTGCCAGAACCCCGCCCTTCCACCGCTTAACGATGCCATAGCAACACGCACCCTGATGGTGCAGACATTCTCGCGCTGCATCCTGGGCTCTGCAGAGGAGGTGGACCTGGACGAGCTTCTGGCCACCAAGCTGGTCACCTTCATGATGGAGCACCACGACAGTGTCCTCAGGGTGCCCTCTAACCTGCACAGACATGTGGATGATCACCTCTCCCACCTCAGGAGGGTACAGATAAAGTATGCCGGTGCCGATACAGACGCCTCCCTGGTGTCTCCGTCGTACTGCAGGAAGATTAGCAGGGCAGAGTTTGAGGAGCAGAGAGTCTCCAGCTCCCAGGGGCCCATGCAGGAGCTGCTGGAGGGCCTCATCGCCGACACTGAGCTCTCAGCCAAGGACAAGAGGAAGAGACTCAAGCAGTTCCAGAAGTCCTATCCGGAGATCTACCGCAGGCGGTTCCCCACAGCGGAGAGCAAGGCTGCCGTCTTACCAGAGAAAGCACCACGGCTCAAACCCCAGCTCATGCTCCTAACCCTAAAGAAACCATTCCAGCCTTTCCAAAGGAGTTGGAGCTTTAGGACCTAACTCTCACCTCTGACTCTGCACGTCTGACCTCTACAGTGTGGCCAGGAGACAGGGAGGattatgtgtgttggagtgtttgGAGCTTATTCCACAGCATGTCAATGAGAATAGAATTCACAGGGGTAAAGTGGCAATAGATGGAATAGTGTTGCCAATTTGACTTACTATACTAGAAACTACTGTTAAACTAAAAAGAGAAGTATAGTAGAAACTACTGTTAAACTAAGAAGAGGATGCTAGGAATCCATAAAGGGCAGCTTGTGTTAGCCAATTAAACAGTGACTGGAAATTATCATGCATAACAGGTCCATAGAATTGGTCACTACAGGTAGAATTAGAAATGTGTGTGCCATGTTTAAACTGGTTtttaaaaatgaaacaaaaattaccccctttttctccccaatttcgatcttgtctcatcgctgcaactccccaatgggctcgggaggtgaaagtcgagtcatgcgtcctccgaaacatggtTCTTAGCACCCgtccgcttaacccggaagccacccgcaccaatgtgttgtaGGAAACatcgttcaactgacgaccaggtcagcctgcaggcgcgtgacaaggagtcgctagagcgtgatgtgccaaaccctcccctaaccctggcgacgctgggccaattgtgcgccgctttATGGGACTTCCGATCACAGCTGATTGTGATACAGCCCCGGAttaaacctgggtctgtagtgacgcctctagcactgtgatgcagtgtcttagaccgctgcaccactcgggaggcccatgttttttttccccaccaagtgaacacaatttttttttttggcgTCATGCATTTCAATTGGCCatttacagtgagctccaaaccaattgggacagtgaccatttgttgttgttttggctctttaCTGCggcactttggattttaaatgatacaatgactgaggttaaagtgcagactgtcggCTAAAAATGTGAGTGTATTTTCATGCCATTTTAGGGAACCAAGAGTATTGGAACAAATTCacgtgtattaaagtagtcacgtttagtatttggtcccatattcaaagcacgcaatgattacgtcaagcttgtgactacacatttgttgaatgcatttgctgttcgttttggttgtttcagattattctgtgcccaataga

Function

symbol description
depdc1b Predicted to act upstream of or within intracellular signal transduction. Is expressed in blastoderm; blastodisc; head; and trunk. Orthologous to human DEPDC1B (DEP domain containing 1B).

NR:

description
DEP domain-containing protein 1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601662.2 True 2924 mRNA 0.50 11 10984720 11004641

Neighbor

gene id symbol gene type direction distance location
LOC110523186 LOC106571348 coding upstream 207 10974098 ~ 10984513 (+)
ppp2cb LOC105021738 coding upstream 20998 10953016 ~ 10963722 (+)
LOC110523183 tex15 coding upstream 33519 10931536 ~ 10951201 (+)
purg purg coding upstream 56248 10920071 ~ 10928473 (+)
LOC110524950 fut10 coding upstream 328481 10654157 ~ 10656239 (+)
LOC110523188 pde4d coding downstream 21460 11026101 ~ 11418933 (+)
LOC110524952 NA coding downstream 498002 11502643 ~ 11507284 (+)
LOC110523192 plk2 coding downstream 503048 11507689 ~ 11513262 (+)
trnaa-agc-2 NA coding downstream 596819 11601460 ~ 11601532 (+)
phax phax coding downstream 799279 11803920 ~ 11808076 (+)
G366739 ubxd6 non-coding upstream 16639 10967326 ~ 10968081 (+)
G366684 NA non-coding upstream 31784 10952665 ~ 10952936 (+)
G366703 NA non-coding upstream 54351 10930074 ~ 10930369 (+)
G366704 NA non-coding upstream 54990 10929445 ~ 10929730 (+)
G366678 NA non-coding downstream 34 11004675 ~ 11005600 (+)
G366681 NA non-coding downstream 1093 11005734 ~ 11006030 (+)
G366766 NA non-coding downstream 7542 11012183 ~ 11012531 (+)
G366786 NA non-coding downstream 33410 11038051 ~ 11038367 (+)
G366797 NA non-coding downstream 44733 11049374 ~ 11051095 (+)
G366748 NA other upstream 7568 10976682 ~ 10977152 (+)
G365197 NA other upstream 1135566 9848703 ~ 9849154 (+)
G364850 NA other upstream 1755489 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 2138604 8775134 ~ 8849107 (+)
G362662 NA other upstream 3065155 7918922 ~ 7919565 (+)
G366973 NA other downstream 421001 11425642 ~ 11428710 (+)
G367684 NA other downstream 873688 11878329 ~ 11880035 (+)
G368440 NA other downstream 2104055 13108696 ~ 13109134 (+)
G369763 NA other downstream 2760606 13765247 ~ 13769296 (+)
G370360 NA other downstream 3251162 14255803 ~ 14259133 (+)

Expression


Co-expression Network