phax (phax)


Basic Information

Item Value
gene id phax
gene name phax
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11803920 ~ 11808076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601680.2
GGAAAAAAGTTGTGACGTAGATGTGGGTACTTTTATTTACTTCCGAGTAAGACTGTAGAAATGGCGGGTGTTAACAGAGATACAATGGATGATTTGGAGGATGGAGAGATTTCTGGATCAAACTCTGATTCAGAAATGGGAACCACAGTTGACGTTAAACCCCAGATGCCTGCAGCAGCTCCTGTTTTCAGTGGCCAGTCTTTCCAGAGTAGGGCCCTTCCACAGACAGCCACGTCAGCCACAAGCTACCGTAGCACAATGAGAACCGCGGACTCCAGCGATAGCGAACCAGACTCGGATGAGGACGCAGCAGTGTGGAGGCGGAAGCGGCAGAAGTGCTCCAACGCTCCCCAACCTGCCCCGGTCCCCACTCCCCACTTCGGAGCCCCCCAGGCTAACCCAGGCGGCCGCAAAGTCAACAACATCTGGGGCTCTGTGGTTCAGGAGCAGACCCAGCAGGCAGTGGAAGCTGAGCTGGATTTCCTTGGTGTGGATGGTGCCATTAGCATGGCCAGCAGGCAGGTGGAGACCTACAACTACGTCCTGGCCCGCAAGctcatggagaaggagagggaggaacaggAGCCGGGTGAGGTAGCCATGTTGGACACTCAGCTGGATGAGTACATGAAGCGTGGCGGGCCGGCCGCCGAAGAGAATGGAGGCGGCCATTTTAAGAGGAAGCGATCGGCCAAAGAGAGGCTGGGCCCCAGGGCTGAGATGGACATCGAGGGTCGGTATGAGATCACAGAGGAAGACCCAGACGACAGGGTGATTGAAGAGATAGCCCACAGGCTACAAGAGCCCAAAAAGGAATTGATTGAGCGAATTGTGAGAGTCATTGGGAAGAAGAAAGCAATAGAACTGCTTGGAGAGACCGCCACACTTGAGGAAACTGGTGGTGTGTACATTATGGATGGCAGCAGGCGACGGACTCCTGGAGGGGTGTATCTCAACTTGCTGAAGAACACTCCCAGTATCTCTAGTGAGCACCTTAAGGAAATATTTTACGACGAAACCCAGAAGGAGTACAAGGGCAAGAAGTCAGCGCAGAAGCGAAGGCGACACGTGGTTGCCAAGAAGATGAAGCAGGCCATCAACACACTGAACCTGCAGGAACACGACGACGTCTCCAGAGAAACGTTCGCAAGCGACACCAACGAGGCCTTGGAGTCTCTCGAGGTGGTTGCCGAAGAGGAGGGCCAACAGGAACCGGAACCAGAACCTGCCATGGGCACTGAGGACACACCCGTAGTCTACAATGCTGCCGACCTGGAGGTCTTTTGATCCAAAATGGCTGCCCAGTGTCTGAACTTATGCACGTCCCAATGAGGACGTCCCATGAGGCTGTGGCATCCACTGTGACAGGTGGACGCTGCTCAGATACAAAATGGTGAATGCACTGTAAGTTACTGTCCACGACAGCGCTATGTAATACTAGACCTTCATCCTCATGTTTGTCTAACAAATTAAGTTGTCTTCTTTATCAATCAGTTGAAGACCAAAGCTTGCATTAGTAACGTGCTTACAGAGCAGCTAGTTACTAACCACAGATACCACCTGACTGATAATTTCAACAACAGAAAATATTTTTCTCCATAAATGGATACCAACCCCTCATCTATTTGCATCCTGGAAAGCATAAGATTTAGTATGGCTTTTTTACTAATGCTCTGTTTGTCCACAATTTCAAATGTAAAGTAAAAATATAAGGCAAGAAATGTGTCACCACTCCAAAGGAATGGCAAAATCAGTATGCCAGCTACAGTACttactatctactgtatatgttTATAGGGAGTATTTGTTTGTGAGCTAGTTGGATTGAACGGGATCTGAGTGTTTGTCATGTACAGGGGAACTGCACAAAGACCAATCCTTAGAAGTAAGATCAAATCCGGTTTGAGATTtttctttaaataaagtttgtttgtTCGACCCCTTTTAAGAGAGAATTTGATCACACGCCAGTGATTTTGAGTGTTGTGAAAAATGCATGCATCTTCAGAGGACCCATGGtctgtttttaatttgtttatgtaGAGATGGGTTCGGATTATGTTGCGTTGtgagataaagcactaaattgtTCCAGTTTCCTAACCCATTGCTGCCCCTCCCCCCTGTCTCTGGACAAGACATCTCggaaaaatacattttctgtGTTTTAACACATTCCTTACATAAAATATTATTAAACTCA

Function

symbol description
phax Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export).

NR:

description
phosphorylated adapter RNA export protein

GO: NA

KEGG:

id description
K14291 PHAX; phosphorylated adapter RNA export protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601680.2 True 2203 mRNA 0.48 5 11803920 11808076

Neighbor

gene id symbol gene type direction distance location
trnaa-agc-2 NA coding upstream 202388 11601460 ~ 11601532 (+)
LOC110523192 plk2 coding upstream 290658 11507689 ~ 11513262 (+)
LOC110524952 NA coding upstream 296636 11502643 ~ 11507284 (+)
LOC110523188 pde4d coding upstream 384987 11026101 ~ 11418933 (+)
depdc1b depdc1b coding upstream 799279 10984720 ~ 11004641 (+)
lmnb1 lmnb1 coding downstream 24833 11832909 ~ 11854832 (+)
LOC110523202 NA coding downstream 111662 11919738 ~ 11922926 (+)
megf10 megf10 coding downstream 138925 11947001 ~ 12051563 (+)
prrc1 prrc1 coding downstream 248876 12056952 ~ 12093392 (+)
LOC110523206 ctxn3 coding downstream 305627 12113703 ~ 12134568 (+)
G367653 NA non-coding upstream 18211 11785204 ~ 11785709 (+)
G367650 NA non-coding upstream 25618 11777962 ~ 11778302 (+)
G367649 NA non-coding upstream 26062 11777594 ~ 11777858 (+)
G367646 NA non-coding upstream 28914 11774710 ~ 11775006 (+)
G367644 NA non-coding upstream 34710 11768951 ~ 11769210 (+)
G367663 LOC106571668 non-coding downstream 1206 11809282 ~ 11810342 (+)
G367670 NA non-coding downstream 9771 11817847 ~ 11818188 (+)
G367682 cssa01h5orf63 non-coding downstream 72253 11880329 ~ 11883213 (+)
G367809 NA non-coding downstream 116862 11924938 ~ 11930233 (+)
G367840 NA non-coding downstream 185591 11993667 ~ 11994319 (+)
G366973 NA other upstream 375210 11425642 ~ 11428710 (+)
G366748 NA other upstream 826768 10976682 ~ 10977152 (+)
G365197 NA other upstream 1954766 9848703 ~ 9849154 (+)
G364850 NA other upstream 2574689 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 2957804 8775134 ~ 8849107 (+)
G367684 NA other downstream 70253 11878329 ~ 11880035 (+)
G368440 NA other downstream 1300620 13108696 ~ 13109134 (+)
G369763 NA other downstream 1957171 13765247 ~ 13769296 (+)
G370360 NA other downstream 2447727 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2513028 14321104 ~ 14325895 (+)

Expression


Co-expression Network