G367682 (cssa01h5orf63)


Basic Information

Item Value
gene id G367682
gene name cssa01h5orf63
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11880329 ~ 11883213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU417907
TATCATGCATGGTCTGACCTTGCATCCATATCTCTGTCCATGAATTTGAGTGTGGTTATAGTGCCCATCCCTCAGCTCTTTACCAAAACACAGGTGGGGTGACCTGGATTCTAGCTTTAAGTAGGCTACACTATTGCAAAGTAATTTTATTGTTGTTCTTCATCCACTTCAGCCAACCGTTTCTCCAGGAGTGAAGTGCTAACTCTGTGCATCATTAGAAACTGTCCATTCAGATGGAAGACTGGGATGTCGTATTTGTATCTGTCCCACCAAATTTTGTTCTCCGGCAGTGTGATATCTACCCTGTGTTTGTATGGTTCAAGGACGTCTTTTGCTTCATCACACAATGGGCATGGATCCTTGGTAAAAAGCGTTAAAGTAGGTAAGTACTTTTGGGAGAAGAGTCTTCTAAGCAGATGAGCAGAACTCTTTGTCCTGTGGAGAGTCCTCGGCAAGACCAAATGCATTGTCTGTCTGCAAAGTAGACAATTACTGCATCAGACATGTAGGCTTGGCACTACTTTATATGCTCTCTGTTACCTGGAGTTGCATGACAAATGGTCCAGGTACACAAGTACAATGCCCACTACAGTAAATG

Function

NR:

description
glutaredoxin-like protein C5orf63 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417907 True 598 lncRNA 0.43 3 11880329 11883213

Neighbor

gene id symbol gene type direction distance location
lmnb1 lmnb1 coding upstream 25497 11832909 ~ 11854832 (+)
phax phax coding upstream 72253 11803920 ~ 11808076 (+)
trnaa-agc-2 NA coding upstream 278797 11601460 ~ 11601532 (+)
LOC110523192 plk2 coding upstream 367067 11507689 ~ 11513262 (+)
LOC110524952 NA coding upstream 373045 11502643 ~ 11507284 (+)
LOC110523202 NA coding downstream 36525 11919738 ~ 11922926 (+)
megf10 megf10 coding downstream 63788 11947001 ~ 12051563 (+)
prrc1 prrc1 coding downstream 173739 12056952 ~ 12093392 (+)
LOC110523206 ctxn3 coding downstream 230490 12113703 ~ 12134568 (+)
slc12a2 nkcc1a coding downstream 297555 12180768 ~ 12261242 (+)
G367670 NA non-coding upstream 62141 11817847 ~ 11818188 (+)
G367663 LOC106571668 non-coding upstream 69987 11809282 ~ 11810342 (+)
G367654 aldh7a1 non-coding upstream 74963 11787255 ~ 11805366 (+)
G367653 NA non-coding upstream 94620 11785204 ~ 11785709 (+)
G367650 NA non-coding upstream 102027 11777962 ~ 11778302 (+)
G367809 NA non-coding downstream 41725 11924938 ~ 11930233 (+)
G367840 NA non-coding downstream 110454 11993667 ~ 11994319 (+)
G367867 NA non-coding downstream 188200 12071413 ~ 12147440 (+)
G367933 NA non-coding downstream 293422 12176635 ~ 12176853 (+)
G367934 NA non-coding downstream 294621 12177834 ~ 12178295 (+)
G367684 NA other upstream 294 11878329 ~ 11880035 (+)
G366973 NA other upstream 451619 11425642 ~ 11428710 (+)
G366748 NA other upstream 903177 10976682 ~ 10977152 (+)
G365197 NA other upstream 2031175 9848703 ~ 9849154 (+)
G364850 NA other upstream 2651098 9228838 ~ 9229231 (+)
G368440 NA other downstream 1225483 13108696 ~ 13109134 (+)
G369763 NA other downstream 1882034 13765247 ~ 13769296 (+)
G370360 NA other downstream 2372590 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2437891 14321104 ~ 14325895 (+)
G370414 NA other downstream 2484459 14367672 ~ 14368161 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010543 NA coding CM030129.1 CM030129.1 34761755 ~ 34766734 (-)