LOC110523206 (ctxn3)


Basic Information

Item Value
gene id LOC110523206
gene name ctxn3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12113703 ~ 12134568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601693.2
tgatgaggggagaaAAACAGTTGAatcccattttagaataaggcagtaacgtaagGTTATAGAGGGCCAACTGATTGTTGTGGAGCTTCCTTAGTTAATGGTCACTGTAGTGCAATTTCAGTAAAACTGTTGTTTTAACAGTAAAACAACCCTGCACGATCACTCTTCATTATGAGGACCAATGGAAAGCTCAGAGTGCCATTTaagtcaaatataaatatatttccaTTGAAAAACATACCCTGCCATTATCAGAGTATGTTGAGAACCCTGTTTCTGTTTCATATGCTATTTTTTTACTCATAATGGATGGATAATTATACAGAGAGAAGGGGAATACGATATCTGGAGACTATTCTCATCTGCTTAGATATCTATATGAGAGGATTATTGCTTCTAAAGATTTTTATATCAAATCAGGAAATTGATTTGCTTCACCCACTCAATGTGAGAACATATGCTGATGACATAATCTCCCTGAGGATTTATTGTGTCCAGAAATGGTTTGAGTACAATAATACATTTAAGCCTCCGTTTTGTAGATTTGAAAATGCATGACTGTGTAATTTTTTTTTGACAGAGTGTTTTATCAATCGAAAAATATCCATAGACTGACATACTGTATTTTGAGAAAGCTGTGCGTAATTTCACTGACTCCGTCGTAGACATATATTTGATTGATTACCATCTTCCATGGATTTATAGGCTTATATCAGTAGAAGCCTATCAATGAGAAATATATAGTCCTAATCaaatacaaaccccccaaaatattTATTCGCTATTTAAAAAATAGACCAATACTTTCCAATTGTTGCTCtagaaaaatctatttaaaaaacGCATCACTGGCGCAAATTCAGTATGGGTGCCCCTCCCTTCCTAGCTGTATGATGGAGTGTGTATGGGGGGAACCCGGTGATTTCCTCTACCAGTTGAGTCCATAAACTCTAGCACACACAGCAGACGCGCAACGATGTGCGCCGAGCGGTTGGAGCCAGTCTCCCTGCATTGCCAATTTCATTGAACCGAGGACTGCATTGTTACCATTTTTGAAGACCCAAGTTAACCTTTTGTTCACAACATTTCTTCCTTTTCGTCCTTGTCTTGTCTTTTCAATATGTGCTGATAttgaaggggagaggggaaggtagAATGGGCGAAACCCTCTGGTTCCCTGTGTAACTCTGGAAATGGATCCGACGTTCTCGCAGGGAGACAAAGACAATGAGGTCCGTCTGGAggggatgagggatggggctggctTCATGAGGATGCCAGAGCACCCCCTGTGGGAGTCCCGTAGCCTAGCcgcccagcacctctcctcctgGATGACGGAGGGTGAgcccttcacctctcctctctccctgctgcaCTCTGCCGGAGGACAGCGCCTCTCCTCGTCCTCTTCCTCATCAGTGGCCGCTACTGCCCTTGTCGCCGCCATGACCCTGGAGCAGAAGACCACCTTCGCCCTGGTCCTCTTCCTCTTCGGTGTCCTCCTCATCCTAATCGTGCGGTGCTTTCGCATCCTGCTGGACCCCTACCGCAGCATGCCCACCTCCACTTGGGCAGACGGCCTGGACGGGCTGGAGAAGGGCCAATTCGACTATACACTGGCATAGGGGGTTGGGCGtccatgtactgtatactgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgaatatgCAGAATGGCTGCATTCACCT

Function

symbol description
ctxn3 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
cortexin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601693.2 True 1757 mRNA 0.45 2 12113703 12134568

Neighbor

gene id symbol gene type direction distance location
prrc1 prrc1 coding upstream 20311 12056952 ~ 12093392 (+)
megf10 megf10 coding upstream 62140 11947001 ~ 12051563 (+)
LOC110523202 NA coding upstream 190777 11919738 ~ 11922926 (+)
lmnb1 lmnb1 coding upstream 258871 11832909 ~ 11854832 (+)
phax phax coding upstream 305627 11803920 ~ 11808076 (+)
slc12a2 nkcc1a coding downstream 46200 12180768 ~ 12261242 (+)
LOC110523213 LOC106571108 coding downstream 182540 12317108 ~ 12321576 (+)
LOC110523216 LOC106570966 coding downstream 236342 12370910 ~ 12560586 (+)
nr5a1b LOC106570956 coding downstream 440011 12574579 ~ 12592217 (+)
psmb7 psmb7 coding downstream 492504 12627072 ~ 12647406 (+)
G367840 NA non-coding upstream 119384 11993667 ~ 11994319 (+)
G367809 NA non-coding upstream 183470 11924938 ~ 11930233 (+)
G367682 cssa01h5orf63 non-coding upstream 230490 11880329 ~ 11883213 (+)
G367670 NA non-coding upstream 295515 11817847 ~ 11818188 (+)
G367663 LOC106571668 non-coding upstream 303361 11809282 ~ 11810342 (+)
G367933 NA non-coding downstream 42067 12176635 ~ 12176853 (+)
G367934 NA non-coding downstream 43266 12177834 ~ 12178295 (+)
G367941 NA non-coding downstream 53468 12188036 ~ 12188273 (+)
G367944 NA non-coding downstream 58093 12192661 ~ 12192892 (+)
G367946 NA non-coding downstream 60204 12194772 ~ 12194983 (+)
G367684 NA other upstream 233668 11878329 ~ 11880035 (+)
G366973 NA other upstream 684993 11425642 ~ 11428710 (+)
G366748 NA other upstream 1136551 10976682 ~ 10977152 (+)
G365197 NA other upstream 2264549 9848703 ~ 9849154 (+)
G364850 NA other upstream 2884472 9228838 ~ 9229231 (+)
G368440 NA other downstream 974128 13108696 ~ 13109134 (+)
G369763 NA other downstream 1630679 13765247 ~ 13769296 (+)
G370360 NA other downstream 2121235 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2186536 14321104 ~ 14325895 (+)
G370414 NA other downstream 2233104 14367672 ~ 14368161 (+)

Expression


Co-expression Network